Lolium rigidum (rigid ryegrass): 124666052
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Entry
124666052 CDS
T09103
Name
(RefSeq) transcription initiation factor TFIID subunit 12b isoform X1
KO
K03126
transcription initiation factor TFIID subunit 12
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124666052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrd03021
]
124666052
03036 Chromosome and associated proteins [BR:
lrd03036
]
124666052
Transcription machinery [BR:
lrd03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
124666052
Coactivators
SAGA/TFTC/STAGA complex
124666052
Chromosome and associated proteins [BR:
lrd03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
124666052
STAGA complex
124666052
TFTC complex
124666052
SAGA complex
124666052
SLIK complex
124666052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIID_20kDa
CBFD_NFYB_HMF
DUF5814
Motif
Other DBs
NCBI-GeneID:
124666052
NCBI-ProteinID:
XP_047059354
LinkDB
All DBs
Position
6:73011352..73017740
Genome browser
AA seq
543 aa
AA seq
DB search
MADPPSVAAIASPQPDQLGASAAAPQSSNPNPLLSPQIPPSPTVSDLSAISSPQLDPAAA
AAGGGPADFPPRPQQLQAPSPTQAVAGAGAGGYGQIHRSGSASRLAAASQLPQYSAAAAR
MYGGQMSFTGGGGQLGQQQQLAARAAMLGQGQLGMMQGQGNAVSAAHYGLQSQMMSQPRQ
KGIVQGAQFNTANTAQALQGMQSMGVMGTLGMNQMRPNGTIPYSAQQRFAHAQMRPQQVL
QQGALSPQKVAGQGLSRTASIAALNSQLPGASQNGQMMQMSPQQQQQWLKQIQSSMASPV
SSHQLQQQQRMILMQQLQKSGLSPHQIAQAQQQHPHLNAQQLMHQQQILQQLQQQQQSPR
MPASGSQKSANLTGSQPGTPLSGGTMAGGSGSQGAEGTSQLLGKRKIQDLVAQVDPLGKL
DPEVEDLVLEIADDFIESVTAFACSLAKHRKSSVLEAKDVLLHLQKNWHLTVPGFSKEDK
NPQRNYVKAAMDPQQLESEAAAVRSASNKQVTNNSIANNQTRGPVAEPSPTPTVGSLSKI
PRF
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atggcggacccgccgtccgttgccgccatcgcctcgccgcagcccgaccagcttggcgcc
tccgccgccgccccacagagctccaaccctaaccccctcctgtccccccaaatccccccc
tcccccaccgtctccgacctctccgccatttcctccccgcagctcgacccggccgcggcg
gctgcaggcggaggaccagcggacttcccgcctcgtccgcagcagctgcaggcgccttcg
cccacgcaggcagtggccggcgctggcgccggaggctatggccagatccaccgctcgggc
tcggcctcccgcctggccgctgcgagccagcttccgcaatactccgctgcagcggccagg
atgtacggcggacagatgagcttcaccggcggcggaggacagctcgggcaacagcagcag
ctggcggcgcgcgcggcaatgctcggtcaggggcagctggggatgatgcaagggcagggc
aacgcggtctctgctgcacactacgggctccagtcacagatgatgtcacagccaaggcaa
aaaggaatagtacaaggtgcacaatttaatactgcaaatacagctcaagcgttgcaaggg
atgcaatccatgggagtcatgggtactttggggatgaaccagatgagaccaaatggaacc
attccatatagtgcccaacaacgttttgcccacgcacaaatgaggccacaacaagtgttg
caacaaggtgcactatctccacagaaggtagctggtcaaggcttgtcgagaacagcatca
attgcagcattaaattcacaactacctggagcatcacaaaatggacagatgatgcagatg
tcacctcagcaacaacagcaatggttaaagcaaatacaatcgtcgatggcctcacctgtt
tcttcacatcaacttcagcagcaacaaaggatgattttgatgcaacaacttcagaaatcc
ggactgagtccacaccagattgcacaagcccaacaacagcatccacatctcaatgcccaa
cagttgatgcatcagcagcagattttgcagcaacttcaacagcagcaacaatctcctagg
atgccagcatctggttcccagaagtctgcaaacttgacaggatcacagccaggcacgcct
ttgtcaggtgggactatggctggtggaagtggaagtcaaggagcagaaggaactagtcaa
cttctggggaagagaaaaatacaagatttggttgcgcaggtggatcccctcggcaaactt
gatccagaagtggaggatttggttttagagatagcggacgacttcattgagtcggtgact
gcatttgcatgcagcctggcaaagcaccggaagtcatcagttctggaagccaaagatgtc
ttgctacacctacagaaaaattggcatctgactgttcctggtttctcaaaggaggacaag
aatccacagagaaattatgtaaaggcagcgatggatccccaacagctggaatctgaagct
gctgcagttagaagcgcaagtaataaacaggtcactaataattctatcgccaacaatcag
acaagaggtcctgtggcggagccttcaccaacacctacagtgggctctctgtcaaaaatt
cctcgtttctga
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