Lolium rigidum (rigid ryegrass): 124670734
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Entry
124670734 CDS
T09103
Name
(RefSeq) putative DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
124670734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124670734
Enzymes [BR:
lrd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
124670734
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
124670734
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
DNA_ligase_IV
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
124670734
NCBI-ProteinID:
XP_047063165
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All DBs
Position
7:1136117..1145687
Genome browser
AA seq
1233 aa
AA seq
DB search
MAARVRFGLLVSMFQAMSQDRTATKKRGRLRAFLDVVYGESAKDDYFSALRLIIPGLDRE
RTSYGLKEAALAAVLVDALGIAKDSPDALRLINWRRGGGGRNAGNFALVAAEVLQRRQGM
TSGGLTIKEVNDALDRLSASDNRSEKALILSSLIKKTTALEMKWLLMIILKDLKVGISEK
GVFHEFHPDAEDLFNVTCDLKLVCEKLNDRSQRHKRQDIEVGKAVRPQLALRVSNASSAW
KKLHGKPVVAECKFDGERIQIHKNGDDIHFFSRTFFDHSEYAPAMSKFIKENILAERCIL
DGELLVWDTVLNRFDEFGSNQEIAKAESEGLKTDRQLCYIAFDILYAGEGSFIHLSLTER
HEMLRKFVKPLKGRVEILVPAGGLNIHRTPDEPCWSIFAPNIEDIEKFFKETVENRDEGI
VLKDLDSKWEPGDRNGKWLKLKPDYINAGADLDVIIIGGYYGSGRRGGEVAQFLVGLAVP
SDDNSYPKRFLSFCRVGTGLSDEELATLVAKLKPHFRKNEYPKKPPRFYEVTNNSKERPD
VWIESPDKSVIISITSDIRTIKSEVFAAPYCLRFPRIQRVRYDKPWHECLDVQSFAEIVH
SSNGTMHKAEDAKSLKNDNLKNSKTNKRREKKNVSIIPAHLMKTDVSGLKGETLIFANTM
FYFVNTPPSYNLDYFHKLVVENGGSFSMNLNDSVTHCIAAEKKGIKYKAAIRHGRIIHHS
WILDCSKQKCLLRLQPKYILFLADFARHKFPEEIDSYADFYYWDIDVADLKQIFSNIDKV
PVDPSMVHRYKKKYYADERFCFFQGCCIYFYHAPLVNEDYNVISDLALKRVKQDLTMHGG
QFCSSLAPATHLVIVSVLQVYNFDIVYKSFPPAERRYLHDKRLHVVTNKWLEDSVDKQLK
LPETAYNLKPDTLEEVHIERSEENIQPSNDKHVEDVEVEPSHAKNVRKRGRPASSSSRTV
RAAPKPVRRTKARRGNKHAKIDDIESEESGPGETGQDDLKSNTDDISKMEEDSSDKDHRP
PRAAPRPVRRTNARRGNRRAKVDYHESEESEPGEGQEDQNMDTKEDNLDKDLGPPPGAQF
IALDEEKPKVVKLTAAEETASSPKYESKGTSEITNTVEGTSMRGEKIEQMVDPLHAMLLD
MLPSLRNIQGEHASSAPPAKVEIDPPRVGSSTTNYRAPVPETGSSASNSAAPVPQTGSST
HGTNIPAPAPDGAAPKKKKVSYKDMAGELLKDW
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgagggtgcggttcgggctcctggtgtcgatgttccaggccatgtcgcaggac
cgcacggcgaccaagaagcggggccgcctccgcgcgttcctcgacgtcgtctacggggag
agcgccaaggacgactacttcagcgcgctccgcctcatcatccccgggctcgaccgcgag
cgcacctcctacgggctcaaggaggcggccctcgccgccgtcctggtcgacgcgctcggg
atcgccaaggactcccccgacgctctccgcctcatcaactggcgccgtgggggcggcggc
cgcaacgccggcaacttcgccctcgtcgccgctgaggtactgcagcggaggcaaggaatg
acttctggtgggttgacgataaaggaggttaacgacgcactcgatcgtctgtcagcaagt
gacaataggtctgagaaggctttgattctttcaagtctgatcaagaaaaccactgccctt
gaaatgaagtggcttctaatgattattcttaaagatttaaaagtggggatcagtgagaag
ggtgtattccatgagtttcatcccgatgccgaagacctgttcaatgtcacttgtgactta
aagttggtctgtgaaaagctcaatgatcggagtcaaaggcacaaacgtcaggatatagaa
gtcggaaaggccgtgaggcctcagctagctctgagagtcagtaacgcttcatctgcttgg
aagaagcttcatggcaaaccagtggttgctgagtgcaaatttgatggcgagcgtatccaa
attcacaaaaatggggacgatattcatttcttctcacggaccttttttgatcattctgaa
tatgcacccgcgatgtccaaatttattaaggagaatatcttggctgaaaggtgtattttg
gatggagagctgcttgtgtgggacactgtgcttaatcggtttgacgaatttggctcaaac
caggaaatagcaaaggctgaaagtgaggggctgaagactgatcgacagttgtgctatatt
gcttttgacattctttatgctggagagggtagttttatccacctgagtttgacagagcgg
catgaaatgttgcggaagtttgttaaacccttaaagggtcgtgttgagattttggtccca
gcaggtggtctgaacatccatcgtaccccagatgaaccatgctggtccatttttgcaccc
aatattgaagatattgagaaattcttcaaggagactgttgaaaacagagatgagggaatt
gtactaaaggaccttgactccaaatgggaacctggtgatcgaaatggaaagtggcttaaa
ttaaagcctgattatataaatgctggtgctgatctggatgttattattataggtggatat
tatggatcagggcgtcgagggggagaggttgcacagtttttagttggtcttgcagtgcct
tcagatgataatagttaccccaaaagattcctttctttttgtcgagtcggtactggtctc
tccgatgaagaacttgccactctagtcgcgaaactgaagccccacttcagaaaaaatgag
taccccaaaaaaccacccagattttatgaagtaacaaacaattcgaaggagcggccagat
gtttggatagaaagccctgataagtcagtcataatatctataacaagtgatattcgaaca
atcaaatctgaggtatttgctgccccatactgcttgaggttcccccgcattcaacgagtg
agatatgataagccatggcacgagtgccttgatgtgcagtcatttgcggagattgtgcat
tcaagtaatgggacaatgcacaaggcagaagatgctaagagtctgaaaaatgacaactta
aagaactcaaaaacaaacaaaaggagagagaagaagaatgtatcaatcatccctgcacat
cttatgaagactgatgtatcaggcttaaagggagaaaccctgatatttgcaaacacgatg
ttctattttgtcaacacccctccatcatataacctcgactatttccataaactggttgtg
gagaacggaggatctttctcaatgaatcttaatgactcagttactcactgtatagcagcg
gagaagaaaggtatcaaatataaggcagccatacgccacggaaggatcatccatcattca
tggatcttggactgttccaagcaaaaatgtcttcttcgtttgcaacccaagtatatcctc
tttcttgcagattttgccaggcacaaatttcctgaagagatcgactcgtacgctgacttt
tactactgggacatcgacgttgctgacctcaagcagattttcagcaacatcgacaaagtt
cctgtcgatccaagcatggtacatcggtacaaaaagaagtactatgcagatgaaagattc
tgcttcttccagggttgctgcatttacttctatcatgcacctttagttaatgaggactac
aatgtaatatctgatcttgcactgaagagggtgaagcaggaccttaccatgcatggtggt
cagttttgcagcagccttgctcctgcaacccatttggttatagtttcagttcttcaggtg
tacaattttgacatagtgtacaagagcttccctccagctgagagacgttacctacatgac
aaaagattgcatgtagtcactaataagtggttagaagattcagtggataaacaactgaag
cttcctgaaacagcctacaaccttaaaccagatacattagaagaagtacatatcgaaagg
agtgaggagaatatccagccctctaatgacaagcacgtggaagacgtggaggttgaacca
tctcatgctaaaaatgtaaggaaaaggggcaggccggccagcagtagttcaagaactgta
cgggctgctcctaagccagtccgaagaacaaaggctagaagaggaaataagcatgcaaag
atagatgatattgaatctgaagaaagtggccctggtgaaacaggccaggatgatctaaag
tcaaacacagatgacatctctaagatggaagaagatagcagcgacaaagatcatagacca
cctcgagctgctcctagaccagttcgaagaacaaatgctagaagaggaaatcggcgtgcg
aaagtagattatcatgaatctgaagaaagtgaacctggtgaaggtcaagaagatcaaaac
atggacacgaaggaagataacctggacaaagacctaggaccacctccaggtgcccagttc
atcgcattggatgaggaaaagcccaaagttgtcaaattgactgccgcggaggagacagca
agcagtccaaaatacgaaagcaagggaacttctgaaataacaaacactgttgaaggaaca
agcatgagaggagagaagatagaacagatggttgatcctttgcacgcaatgcttcttgac
atgttaccatcacttaggaacatacagggagaacatgcgagcagcgctccaccagccaaa
gttgagatcgatccaccacgggtgggaagttcgacaacaaattacagggcaccggtgcct
gagacaggaagctctgcatcaaactctgcggctccagtaccgcagacaggaagttccaca
cacggcaccaacattccagctccagctccagatggtgctgctccaaagaagaaaaaggtg
agctacaaagatatggctggtgagcttctgaaagattggtga
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