Lolium rigidum (rigid ryegrass): 124674707
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Entry
124674707 CDS
T09103
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03022
Basal transcription factors
lrd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124674707
09124 Replication and repair
03420 Nucleotide excision repair
124674707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrd03021
]
124674707
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124674707
Transcription machinery [BR:
lrd03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124674707
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124674707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Tfb4
IBR
Motif
Other DBs
NCBI-GeneID:
124674707
NCBI-ProteinID:
XP_047066711
LinkDB
All DBs
Position
7:78874652..78878097
Genome browser
AA seq
425 aa
AA seq
DB search
MYGVGGGGFNAPSTASGKRKNQEDDEEDEEEETGDGRVLEAWERAYADDRSWEALQEDES
GLLRPIDTKNLVHSQYRRRLLLRSAAAAARIQKGLIRYLYIVIDLSRAASEMDYRPSRMA
VVAKCAEAFIREFFDQNPLSHVGLVTIKDGISHRLTDIGGSPESQIMALMGKLECSGDSS
LQNALELVHGYLNQIPSYGHKEVLFLYSALNTCDPGDVMETIEKCKKSKVRCSVIGLAAE
IFICKHLCEETGGSYTVALDESHFKELLLEHAPPPPAIAEYAAANLIKMGFPQRGAEDLI
SICSCHKKVKSGAEGYICPRCKVNVCELPTECRTCGLTLVSSPHLARSYHHLFPVAPFDE
VTFKLGQKGGQNCYGCQQSLINSASQSNLHVCCPKCKQHFCFDCDIYIHESLHNCPGCES
QRSLP
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgtacggcgtcggcggcggcgggttcaacgcgccgtccacagcctccggcaagcgcaaa
aaccaggaggatgacgaggaggacgaggaggaggagaccggcgacggccgcgtcctcgag
gcctgggagcgcgcctacgcggacgaccggtcgtgggaggcgctgcaggaggacgagtca
ggcctgctccgccccatcgacaccaagaacctcgtccactcccagtaccggcggcgcctc
ctgctgcgctccgcggccgccgcggcccgcatccagaagggcctcatccgctacctctac
atcgtcatcgacctctccagggcagcttcggaaatggactaccgtcctagtcgaatggcc
gttgttgcaaagtgtgctgaggcattcataagagagttctttgatcagaatcctctaagt
catgttggactagtgacaattaaagatggcatttctcatcgccttacggatattggtggg
agtccagagtcacaaatcatggcgttgatggggaagcttgagtgttctggtgattcatct
ctccagaatgctctagaacttgtgcatggttatttgaaccaaatcccgtcatatggccac
aaagaagtattgtttttgtactctgcccttaatacatgtgatcctggtgatgtaatggag
actatagaaaaatgcaagaaatctaaagttcgatgctcagttattgggcttgccgcagaa
attttcatttgcaagcatctctgtgaagagactggtgggtcctacacagtcgcattggat
gagtcccacttcaaggaattgcttctggaacacgctccaccaccacctgcaattgctgaa
tatgctgcagctaacttgatcaagatgggttttccacagaggggagcggaggatcttatc
tccatctgctcttgtcataagaaagttaagtccggggctgaaggctacatatgccctaga
tgcaaagttaatgtgtgcgagcttccaactgagtgtcgaacatgtggtttaacacttgtc
agttctccacatctggcgcggtcgtatcaccatctattccctgtagctccatttgatgag
gtgacgttcaaattgggtcaaaagggaggacaaaattgttacggctgccagcagagcctc
attaactccgctagccaatctaatttgcatgtatgctgtccaaaatgcaagcagcacttc
tgctttgactgtgacatctacatccatgagagcttgcacaattgccctggttgcgagagt
cagcgcagtttgccttga
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