KEGG   Lolium rigidum (rigid ryegrass): 124676361
Entry
124676361         CDS       T09103                                 
Name
(RefSeq) histone deacetylase 9-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
lrd  Lolium rigidum (rigid ryegrass)
Pathway
lrd03082  ATP-dependent chromatin remodeling
lrd03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:lrd00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    124676361
   03083 Polycomb repressive complex
    124676361
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:lrd03036]
    124676361
Enzymes [BR:lrd01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     124676361
Chromosome and associated proteins [BR:lrd03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     124676361
   HDAC complexes
    Sin3A-HDAC complex
     124676361
    BRAF-HDAC complex
     124676361
    REST complex
     124676361
    SHIP complex
     124676361
    MiDAC complex
     124676361
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     124676361
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    124676361
  Chromatin remodeling factors
   NuRD complex
    124676361
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 124676361
NCBI-ProteinID: XP_047068393
LinkDB
Position
7:148720055..148725307
AA seq 430 aa
MLDKDRISYFYDGDVGNVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPTEL
AQFHSADYVEFLHRITPDTQHLYASELTRFNLGEDCPVFDDLFEFCQIYAGGTLDAARRL
NHKLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDLFFPGTGDIKDIGDREGKYYAINIPLKDGIDDNSFTRLFKT
IIAKVVETYLPGAIVLQCGADSLARDRLGCFNLSIEGHAECVKFVKKFKIPLLVTGGGGY
TKENVARCWAVETGVLLDTELPNDIPDNEYIKYFGPDYTLKVPNLSMDNLNSKSYLSSIK
VQVMESLRAIQHAPGVQMQEVPPDFYVPDFDEDELDPDERVDQHTQDKQIHRDDEYYEGD
NDNDHDDGAH
NT seq 1293 nt   +upstreamnt  +downstreamnt
atgctggacaaagacaggatatcctacttctacgatggggatgttggcaatgtgtatttc
gggccaaatcacccgatgaaaccgcatcgtctttgtatgacacatcatcttgtgctttca
tatgatcttcacaagaagatggagatatatagaccccacaaagcatatccaacagagctc
gcccagttccattctgctgattatgtggaattcttgcaccggataactcctgatactcag
cacttgtatgcaagtgaattaactagattcaatcttggagaggactgcccggtctttgat
gatttatttgagttctgccaaatctatgctggaggaactctagatgcggctcgaagattg
aatcataaattatgtgatattgccattaattgggctggtgggctgcatcatgcaaagaag
tgtgaggcgtcaggcttctgctacattaatgatctggttttggggattctggagcttctc
aagtatcatgctagggttctctatattgacattgatgttcatcatggagatggagttgaa
gaagccttctatttcactgacagggtaatgactgtaagtttccacaagtatggtgatctg
ttctttcctggcactggtgatattaaggatataggagacagggaaggaaaatattacgcc
atcaacatcccacttaaagatggcatagatgacaacagctttactcggctcttcaaaacg
attattgccaaggttgttgagacttatctgccaggtgctattgttcttcaatgtggggct
gattcattggcacgagaccgtctagggtgtttcaatctttcaattgaaggccatgctgaa
tgtgtgaagtttgtcaagaaatttaaaatccccctgctggtgacgggaggtggtggatac
accaaagagaatgtagcacgctgttgggctgttgaaactggagtccttctagacacagag
ctcccaaatgacatccccgacaatgaatatattaaatactttggtccagactatacattg
aaagtaccaaatctcagcatggacaacttgaatagtaagagctatctgagttcaatcaaa
gtgcaagtgatggagagtttgcgggccatacagcatgcacctggagttcagatgcaagag
gttccacctgatttctatgtccccgactttgatgaagatgagctggatcctgatgaacgt
gttgaccagcatacccaagacaagcagattcaccgcgacgacgagtactacgaaggtgac
aacgacaatgatcatgacgatggtgcacattga

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