Lolium rigidum (rigid ryegrass): 124676361
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Entry
124676361 CDS
T09103
Name
(RefSeq) histone deacetylase 9-like
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03082
ATP-dependent chromatin remodeling
lrd03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124676361
03083 Polycomb repressive complex
124676361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lrd03036
]
124676361
Enzymes [BR:
lrd01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
124676361
Chromosome and associated proteins [BR:
lrd03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
124676361
HDAC complexes
Sin3A-HDAC complex
124676361
BRAF-HDAC complex
124676361
REST complex
124676361
SHIP complex
124676361
MiDAC complex
124676361
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
124676361
Heterochromatin formation proteins
Other heterochromatin formation proteins
124676361
Chromatin remodeling factors
NuRD complex
124676361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
124676361
NCBI-ProteinID:
XP_047068393
LinkDB
All DBs
Position
7:148720055..148725307
Genome browser
AA seq
430 aa
AA seq
DB search
MLDKDRISYFYDGDVGNVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPTEL
AQFHSADYVEFLHRITPDTQHLYASELTRFNLGEDCPVFDDLFEFCQIYAGGTLDAARRL
NHKLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDLFFPGTGDIKDIGDREGKYYAINIPLKDGIDDNSFTRLFKT
IIAKVVETYLPGAIVLQCGADSLARDRLGCFNLSIEGHAECVKFVKKFKIPLLVTGGGGY
TKENVARCWAVETGVLLDTELPNDIPDNEYIKYFGPDYTLKVPNLSMDNLNSKSYLSSIK
VQVMESLRAIQHAPGVQMQEVPPDFYVPDFDEDELDPDERVDQHTQDKQIHRDDEYYEGD
NDNDHDDGAH
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgctggacaaagacaggatatcctacttctacgatggggatgttggcaatgtgtatttc
gggccaaatcacccgatgaaaccgcatcgtctttgtatgacacatcatcttgtgctttca
tatgatcttcacaagaagatggagatatatagaccccacaaagcatatccaacagagctc
gcccagttccattctgctgattatgtggaattcttgcaccggataactcctgatactcag
cacttgtatgcaagtgaattaactagattcaatcttggagaggactgcccggtctttgat
gatttatttgagttctgccaaatctatgctggaggaactctagatgcggctcgaagattg
aatcataaattatgtgatattgccattaattgggctggtgggctgcatcatgcaaagaag
tgtgaggcgtcaggcttctgctacattaatgatctggttttggggattctggagcttctc
aagtatcatgctagggttctctatattgacattgatgttcatcatggagatggagttgaa
gaagccttctatttcactgacagggtaatgactgtaagtttccacaagtatggtgatctg
ttctttcctggcactggtgatattaaggatataggagacagggaaggaaaatattacgcc
atcaacatcccacttaaagatggcatagatgacaacagctttactcggctcttcaaaacg
attattgccaaggttgttgagacttatctgccaggtgctattgttcttcaatgtggggct
gattcattggcacgagaccgtctagggtgtttcaatctttcaattgaaggccatgctgaa
tgtgtgaagtttgtcaagaaatttaaaatccccctgctggtgacgggaggtggtggatac
accaaagagaatgtagcacgctgttgggctgttgaaactggagtccttctagacacagag
ctcccaaatgacatccccgacaatgaatatattaaatactttggtccagactatacattg
aaagtaccaaatctcagcatggacaacttgaatagtaagagctatctgagttcaatcaaa
gtgcaagtgatggagagtttgcgggccatacagcatgcacctggagttcagatgcaagag
gttccacctgatttctatgtccccgactttgatgaagatgagctggatcctgatgaacgt
gttgaccagcatacccaagacaagcagattcaccgcgacgacgagtactacgaaggtgac
aacgacaatgatcatgacgatggtgcacattga
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