Lolium rigidum (rigid ryegrass): 124701121
Help
Entry
124701121 CDS
T09103
Name
(RefSeq) THO complex subunit 1-like
KO
K12878
THO complex subunit 1
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03013
Nucleocytoplasmic transport
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124701121
09122 Translation
03013 Nucleocytoplasmic transport
124701121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124701121
03041 Spliceosome [BR:
lrd03041
]
124701121
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
124701121
Spliceosome [BR:
lrd03041
]
Complex C
Other components
EJC/TREX
124701121
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124701121
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
HODM_asu-like
Motif
Other DBs
NCBI-GeneID:
124701121
NCBI-ProteinID:
XP_047089124
LinkDB
All DBs
Position
3:complement(6190350..6201820)
Genome browser
AA seq
636 aa
AA seq
DB search
MAEPLPPPPPSNSGLRILLAKARAPTSSPSTSAAVSSHADRDRIIGVFRTALARNESPEA
FALQAVQEAIKPQKQTVLVLEENQSLENALRRLLQELVSSAVQSDKGIMQYGNSLDSGES
NCLITRLLDIMLYLCERGHVEGGMVFQLLEDLTDMSTIKDCKDVFGYIESKQDILGKQEL
FGRGKLVMLRTCNQLLRRLSKSNDVVFCGRIIMFLAHFFPLSERSALNIKGVFNTSNETK
YEKDATDGISVDFNFYQTLWSLQEHFRNPALTTTNPTKWQKFASNLTVVLSTFEAQPLSD
ADGKHNNLEQEEDAAFNIKYLTSSKLMGLELKDASFRRHILVQCLIFFDYLKAPGKTDKD
GPSESMKEEIKSCEERVKNLLEMIPPKGKEFLQSIEHILEREKNWVWWKRDGCPAFEKQP
FEKKKTDQAVGRKRKLRWRLGNKELAQLWKWAELNPNALTDPDRVRPPVIAEYWKPLAED
MDTSAGIEEEYHHKNNRVYCWKGLRFTARQDLEAFSRFCDYGIEGVVPPELLPADVRAKF
NSKPGEKAKRPKREDTKGTSSHPKEPQVAAATPDTDGGGSGDQEEGAVPMDSDNPAVDDG
QKRSPGEVSGPESGQCEAEDDGEDNNSKSAHSRDPR
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcccttgccgccgccgccgccgtccaactccggcctccgcatcctcctcgcc
aaggcccgcgcgcccacctcctctccatccacatccgccgccgtctccagccacgccgac
cgcgaccgcatcatcggagtgttccggaccgcgctggccaggaatgaatctccggaagct
ttcgcgctccaggcagtccaggaagcaattaagccccagaagcaaacggtgctggtgctc
gaggagaaccagtccttggagaatgcgctccgaaggctgctgcaggaactcgtttcatct
gcggttcagtcggacaaaggaattatgcaatatgggaactcgttggatagcggagaaagt
aattgcctgattacgcgtcttcttgatatcatgctttacctttgtgaaagaggccatgtt
gagggtggtatggtattccagctgttagaagatttgacagacatgtcaactatcaaagac
tgcaaagatgtctttgggtatattgagagcaagcaggatatcttgggaaagcaagaacta
tttgggcgtggcaagttggttatgctgaggacttgcaaccaacttcttcgaaggctttca
aagtcaaacgatgtggtattctgtgggcgtattatcatgtttctggcacatttctttccg
ttatcggagcgctcagctctcaacattaagggagttttcaacacatcaaatgaaacaaag
tatgagaaagatgccaccgatggaatttctgttgatttcaacttctaccagaccctgtgg
agtctacaggagcatttcaggaacccagctttgactactacaaacccaacaaaatggcaa
aagtttgcttctaatttaacggtcgtgctaagcacatttgaagctcagcctctctccgat
gctgatggaaaacataataaccttgagcaggaggaagatgctgctttcaatattaagtac
cttactagcagtaaattgatgggcttagagttgaaagacgcgagttttcgacgacacatc
cttgtccagtgccttatattttttgactatctcaaggcgcctggaaagactgacaaagat
ggtccatccgagagcatgaaagaggaaatcaaatcctgtgaagagcgtgttaagaatctt
ctggagatgattccaccaaaagggaaggaattcctacaaagcattgagcatattcttgag
cgggagaaaaactgggtttggtggaagagagatggatgtccagcatttgaaaaacaacct
tttgaaaagaagaaaacagatcaagctgttggcagaaaacgtaagctaaggtggagactg
ggaaacaaagaacttgcccaactgtggaaatgggcagaactaaaccctaatgctttgact
gatcctgaccgagtccggccaccagtaattgcagaatactggaaaccacttgcagaagat
atggacacatctgctggaattgaggaggagtatcaccacaaaaataatcgtgtttattgc
tggaaaggtttacggtttacagcccgacaagatctggaagcattttctcgattttgtgac
tacggaattgaaggggttgtacctccagaactcttgccagccgacgtgcgtgcaaagttc
aactcgaagcctggagagaaggcgaaacggcctaaaagggaagatacaaaaggcacttca
tctcaccccaaggagccacaggttgctgcggctacacctgacaccgatggtggcggcagc
ggtgaccaggaagaaggcgccgtgccaatggattccgacaaccccgcggtagatgatggc
cagaagcggagcccaggcgaagtctctgggccggagtctggacagtgcgaagctgaagat
gacggcgaagataataactcgaaaagtgcgcatagtagagaccctcggtag
DBGET
integrated database retrieval system
