Lolium rigidum (rigid ryegrass): 124701203
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Entry
124701203 CDS
T09103
Name
(RefSeq) THO complex subunit 1-like
KO
K12878
THO complex subunit 1
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03013
Nucleocytoplasmic transport
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124701203
09122 Translation
03013 Nucleocytoplasmic transport
124701203
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124701203
03041 Spliceosome [BR:
lrd03041
]
124701203
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
124701203
Spliceosome [BR:
lrd03041
]
Complex C
Other components
EJC/TREX
124701203
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124701203
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Phage_GP20
HODM_asu-like
Motif
Other DBs
NCBI-GeneID:
124701203
NCBI-ProteinID:
XP_047089211
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All DBs
Position
3:complement(14550402..14558389)
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AA seq
637 aa
AA seq
DB search
MAEPSPPPPPPSNSGLRILLTKARAPTSSPSTSAAVSSHADRDRIIGVFRTALARNESPE
AFALQAVQEAIKPQKQTVLVLEENQSLENALRRLLQELVSSAVQSDKGIMQYGNSLDSGE
SNCLITRLLDIMLYLCERGHVEGGMVFQLLEDLTDMSTIKDCKDVFGYIESKQDILGKQE
LFGRGKLVMLRTCNQLLRRLSKSNDVVFCGRIIMFLAHFFPLSERSALNIKGVFNTSNET
KYEKDATDGISVDFNFYQTLWSLQEHFRNPALTTTNPTKWQKFASNLTVVLSTFEAQPLS
DADGKHNNLEQEEDAAFNIKYLTSSKLMGLELKDASFRRHILVQCLIFFDYLKAPGKTDK
DGPSESIKEEIKSCEERVKNLLEMIPPKGKEFLQSIEHILEREKNWVWWKRDGCPAFEKQ
PFEKKKTDQAVGRKRKLRWRLGNKELAQLWKWAELNPNALTDPDRVRPPVIAEYWKPLAE
DMDTSAGIEEEYHHKNNRVYCWKGLRFTARQDLEAFSRFCDYGIEGVVPPELLPADVRAK
FNSKPGEKAKRPKREDTKGTSSHPKEPQVAAATPDTDGGGSGDQEEGAVPMDSDNPAVDD
GQKRSPGEVSGPESGQCEAEDDGEDNNSKTAHSRDSR
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atggcggagccctcgccgccgccgccgccaccgtccaactccggcctccgcatcctcctc
accaaggcccgcgcgcccacttcctctccatccacgtccgccgccgtatccagccacgcc
gaccgcgaccgcatcatcggagtgttccggaccgcgctggccaggaatgaatctccggaa
gctttcgcgctccaggcagtccaggaagcaattaagccccagaagcaaacggtgctggtg
ctcgaggagaaccagtccttggagaacgcgctccgaaggctgctgcaggaactcgtttca
tctgcggtccagtcggataaaggaattatgcaatatgggaactcgttggatagcggagag
agtaattgcctgataacgcgtcttcttgatatcatgctttacctttgtgaaagagggcat
gttgagggtggtatggtgttccagttgttagaagatttgacagacatgtcgactatcaaa
gactgcaaagatgtctttgggtatattgagagcaaacaggatatcttagggaagcaagaa
ctgtttgggcgtggcaagttggttatgctcaggacttgcaaccaacttcttcgaaggctt
tcaaagtcaaacgatgtggtattctgtggacgtattatcatgtttctggcacatttcttt
ccgttatcggagcgctcagctctcaacattaagggagttttcaacacatcaaatgaaaca
aagtatgagaaagatgccaccgatggaatttctgttgatttcaacttctaccagaccctg
tggagtctacaggagcatttcaggaacccagctttgactactacaaacccaacaaaatgg
caaaagtttgcttctaatttaacggtcgtgctaagcacatttgaagctcagcctctctcc
gatgctgatggaaaacataataaccttgagcaagaggaagatgctgctttcaatattaag
taccttactagcagtaaattgatgggcttagagttgaaagacgcgagttttcgacggcac
atccttgtccagtgccttatattttttgactatctcaaggcacctggaaagactgacaaa
gacggtccatctgagagcatcaaagaggaaatcaaatcctgtgaagagcgtgttaagaat
cttctggagatgattccaccaaaagggaaggaattcctacaaagcattgagcatattctt
gaacgggagaaaaactgggtttggtggaagagagatggatgtccagcatttgaaaaacaa
ccttttgaaaagaagaaaacggatcaagctgttggcagaaaacgtaagctaaggtggaga
ctgggaaacaaagaacttgcccaactgtggaaatgggcagaactaaaccctaatgctttg
actgatcctgaccgagtccggccaccagtaattgcagaatactggaaaccacttgcagaa
gatatggacacatctgctggaattgaggaggagtatcaccacaaaaataatcgtgtttat
tgctggaaaggtttacggtttacagcccgacaagatctggaagcattttctcgattttgt
gactacggaattgaaggggttgtacctccagaactcttgccagccgacgtgcgtgcaaag
ttcaactcgaagcctggagagaaggcgaaacggcctaaaagggaagatacaaaaggcact
tcatctcaccccaaggagccacaggttgctgcggctacacctgacaccgatggtggcggc
agcggtgaccaggaagaaggcgccgtgccaatggattccgacaaccccgcggtagatgat
ggccagaagcggagcccaggcgaagtctctgggccggagtctggacagtgcgaagctgaa
gatgacggcgaagataataactcgaaaactgcgcatagtagagactctcggtag
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