Labeo rohita (rohu): 127152268
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Entry
127152268 CDS
T09007
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127152268 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lroh03021
]
127152268 (pcf11)
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127152268 (pcf11)
Transcription machinery [BR:
lroh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127152268 (pcf11)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
127152268 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
Motif
Other DBs
NCBI-GeneID:
127152268
NCBI-ProteinID:
XP_050948797
LinkDB
All DBs
Position
21:complement(16137858..16147740)
Genome browser
AA seq
1454 aa
AA seq
DB search
MSDVGAREDACREYQSSLEDLTFNSKPHINMLTILAEENLQFTKDIVAIIEAQIAKAPAG
EKLPVLYLVDSIVKNVGGEYLEVFAKNLVNSFICVFEKVDEATRKSLFKLRSTWDEIFPL
KKLYALDVRVNSLDPAWPIKPLPPNVNASIHVNPKFLKPTEEASPKPPAPQPPPPSLTQE
QLIRQQLLAKQKQLLELQQKKIELELEQTKAQLAASPAVASNHARFDISPQVTHTVPAPQ
TKTWLPAPSEKVATRDPRLNRLGTTAVTAKEQVMNKKESQVTPSFPNASEKRGQVSAERP
SKLEKMRIPKKDNSAVEEKPKSKSMSPSGKGVLIRPRGMEAEHSKTAELNKKDPRLHKQV
HDKTDSKAEDVREKKKSSEKKERDEDRDQKSSSTRNKLINGSLNKHERLETFLKQEIKVN
KANVRKRSRSRSRSPPLHSPKRKERRSSPKRKTRSITPPPKSGKARISKHPHNDDAFPQS
SLRDERSTKKSAPEPRRSKRPLDDRPADQKDGPQQRISPAEHKDIKDGKRWRSGWEENKH
LKQSESDLSHGRVSTQRHKTWNTNQRPSTPRTPKQHRLSVDSNIQIPEALNSASKRDLLR
KASKRHADGEISSDEFLNVAHQINQLFQYQEERQRSDSWDESCDEGVYQSKKKQPGTMSD
AELSYLEHKSKLRRTQLHRPVQKEGQSPLDEMFYHPQHEMTEQYIEISEVHKIGDAIKPE
REDPRRTDRPPSCTGPTFRNSPSPVNLDGTCGKSTAPPFEQPSSPVEMDQQPGDISPRFE
SPNSVHSGTGPDDGPISVEALPRPDQFLELGRSGRNHGESPGNTPTHSSEGSMPQVNAPR
HDGPNVPQRFDRYKSSQAPFDGPPSHVREPRLDGPPRPYAPPPPRYEGSAGGFEGSGGPV
RYPGHRFDTPHRFERFPKAHERPVRFNNPPVHRPMRYTEPHNIVRFDSQAPIHYDHPMHQ
NRFVNPPRFDNPHMQHGPPGYEEPRFPARLMNYDEQQGPVRFDSPSGGMRFENPVQPEPL
RFDAPPVMPRYDPQGPPRYCAPNIPNQLRPQEPTMYDQTQGQAPVINPAVPPPNFNMPPM
NTFGGPAQQFPIQQNVSQPTSNFSVTGPTSSDFQGSFRPAPFPGPGVANVPQPMIGAQPF
MPPNQIAFQPGSQFQQPEPESLRQIDVNDLLSKLISTGIIKPAQTDSMTDSTSASQTLSV
PEEEEEEEQEEDESVPDLTGFVLDDMKQRHDSIITKLYTGIQCYSCGMRFTASQTDVYAD
HLDWHYRQNRSEKDISKKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVQKT
QEAAKEREFQSVKAAADVVHELCEICQEQFEMYWEEEEEEWHLKNAIRVDEKTYHPSCYE
DYKNTSSFVDCTPSPNKMLTENPLTAFMKQEQGDEASCSSIKEEPSEDDTDAPTVKEEVQ
VKLEGESQTSAIIF
NT seq
4365 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgtaggcgcgagggaggacgcctgccgcgagtatcagtcctcgctggaagat
ctgactttcaacagcaaaccgcacatcaacatgctcaccattctagccgaggaaaacctc
cagttcaccaaggatatcgtcgcaataattgaagcacaaattgccaaggcacctgctggt
gagaagctcccagttttgtacttagtggattccatagtgaagaatgttggaggggaatac
cttgaagtgtttgctaagaacctagtcaattcctttatttgtgtgtttgagaaggtggat
gaggccactagaaaaagtctcttcaaattgcgttccacatgggatgaaattttccccttg
aagaaactttatgcactagatgtgcgtgtgaactctttagatcctgcttggcctataaag
ccattgccaccaaatgtgaatgccagcatacatgtcaacccaaaatttttaaaaccgact
gaagaagcttctccgaagcctcctgcaccacaacctccacctccgagcctgacacaagaa
caattgataaggcagcagttgcttgcaaagcaaaaacagttgttagaacttcagcaaaag
aagatagagctagaacttgaacaaaccaaagctcagttggctgctagtcctgctgttgct
tcaaaccatgcacgtttcgatatctcaccacaagtcactcatacagttcctgcaccacag
accaaaacttggcttccagcaccatcagaaaaagtggcaaccagagatcctagattaaac
agacttggtacaacagctgtaactgcaaaggagcaagtcatgaataagaaggagagtcaa
gtcacaccaagctttccgaatgcatcagaaaaaagaggacaagtctcggctgaaagaccg
agtaagttggagaagatgagaattccaaaaaaggataactctgcagtagaggaaaagccc
aaatccaagtcaatgtcaccatctggaaaaggtgtccttatcagacccagaggaatggag
gctgaacattcaaagactgctgaattgaataagaaggacccaaggttacataagcaggtg
catgacaagaccgattcaaaagctgaagatgtccgagagaagaagaaaagttcagagaag
aaagagagggatgaagatagggatcagaagtccagcagcactaggaacaagcttataaac
ggctctctaaacaagcatgaaagacttgaaacgtttctgaaacaagaaattaaagtgaac
aaagcaaatgttagaaaaaggtctaggtcaagatcacgttcaccaccgttacattctccc
aaaagaaaagagaggcgatcgtctccaaagagaaaaaccaggagtattactccacccccc
aagtctggaaaggctaggataagtaaacatccacataatgatgatgcttttccacagtcg
agtctaagagatgaacgaagtaccaagaaaagcgccccagaaccaagacgatcaaaaagg
ccgcttgacgatagacctgctgatcagaaagatggaccgcagcagagaatttctcctgca
gagcataaagacataaaagatggcaagagatggaggagtggatgggaagaaaataaacac
ctcaaacagtcagagtcagatctttcacacggacgagtgagcacccagagacacaagact
tggaacactaatcaaagaccgtccacacctcgtactcctaaacagcatcgcttgagtgtt
gacagcaacatacaaataccagaagcacttaattctgcaagtaaacgggatcttttaaga
aaggctagcaaaaggcatgctgatggcgaaatatccagtgatgaattcctcaatgtagcc
catcaaataaaccaactgtttcagtatcaagaggaaagacagcggtctgactcttgggat
gaatcgtgtgatgagggagtgtatcagtcaaaaaagaaacaaccaggaaccatgtctgat
gcagagctttcttatcttgaacataaatcgaagttgagaagaacacagcttcaccgtcct
gtccaaaaagagggccagtcgcctttggatgaaatgttctatcaccctcaacatgaaatg
accgaacaatacattgaaatctcagaagtgcataaaattggtgatgccataaagcctgaa
cgtgaagatcctagaagaactgacaggcctccatcgtgtacaggtcccacatttagaaat
tcaccaagcccggtcaacttagacgggacctgtggaaaatccacagcaccaccatttgaa
cagccctcatctccagttgaaatggatcaacaaccaggagacatcagcccacgttttgaa
agtcccaacagcgttcactctggcacaggtccagatgatggtccaataagtgtagaggct
cttccaaggcctgatcaattcttggaactgggaagaagtggacgaaaccatggagaatct
ccagggaatacgccaactcactcctcagaaggttccatgccacaggtgaacgcaccacgg
catgatggaccaaatgttcctcaacgatttgatagatataaaagttctcaagctcccttt
gatgggccacctagccatgtgagagagccaaggttagatggtcctccaagaccttatgct
cctcctcctccacggtacgaaggcagtgcagggggatttgaaggttctggtggacccgta
agatatcctggacatcgctttgatacccctcaccgatttgaaagatttcccaaagcccat
gaaagacctgtgagatttaacaacccaccagtacacaggccaatgaggtacacagagcct
cacaacattgtgagatttgactcacaagccccaattcactatgaccacccgatgcaccaa
aacagattcgttaatccaccaaggtttgataatcctcacatgcaacatggtccaccagga
tacgaggaaccacggttcccagctagactaatgaattatgatgaacagcagggtccagtt
agatttgatagtccatcaggtgggatgcgctttgaaaatcctgtgcagcctgaaccctta
agatttgatgcaccacctgtcatgccaagatatgaccctcaaggtcctccaagatactgc
gctccaaatattccaaaccagcttagaccgcaggagccaacaatgtacgatcaaactcaa
ggtcaagctcctgtgataaaccccgctgtaccaccacctaatttcaacatgccgcccatg
aacacgtttggtggcccggcccaacagttccccattcagcaaaatgtatctcagcctaca
tctaacttcagtgtgacgggacctacgtcatcagattttcagggttcatttagacctgct
ccattccctggtccaggtgttgcgaatgttcctcaacctatgattggagctcaacccttc
atgccaccaaaccagatagctttccagcctggttcccagtttcagcagcctgagccagag
tcattgaggcaaatagatgtgaacgatctgttatcaaaacttatatccactggaataata
aaacctgcacaaaccgactcaatgactgactctacttcagcaagtcagactttatctgtg
cctgaagaggaagaggaggaggaacaagaggaggatgaaagcgtcccagatttgactggc
tttgttttggatgacatgaaacagagacacgacagcattatcaccaaactatatactgga
atccagtgctattcctgcggaatgcgttttaccgcatctcagacagatgtgtacgcagat
catttagactggcactacagacagaatcgttcagagaaggacatcagtaagaaagttaca
caccgccgatggtactacagtctgacggactggattgaatttgaggaaatcgctgatctt
gaagagagggcaaagagtcaattcttcgaaaaagttcatgaagaggttgtgcagaaaact
caggaagcagccaaagagagagagttccagagcgtaaaggctgccgcagacgtcgttcac
gagctgtgtgagatttgccaggagcagtttgagatgtactgggaggaggaagaggaagag
tggcacctgaagaacgccatcagagtcgatgaaaagacatatcatccctcatgttacgaa
gactacaaaaatacatcctcatttgtggactgcacaccatctcctaataaaatgcttaca
gaaaatcctttaacagctttcatgaaacaagagcagggtgatgaggcgtcatgctccagt
attaaagaagagccctccgaggacgatacggatgcaccaacggtaaaagaggaggttcag
gttaagttagaaggagaatcacaaaccagtgcaattattttctaa
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integrated database retrieval system
