Labeo rohita (rohu): 127159316
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Entry
127159316 CDS
T09007
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lroh04121
]
127159316
Ubiquitin system [BR:
lroh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
127159316
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
PRY
zf-C3HC4_4
zf-RING_UBOX
zf-B_box
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
U-box
zf-RING_6
zf-RING_5
OmpH
Motif
Other DBs
NCBI-GeneID:
127159316
NCBI-ProteinID:
XP_050958147
LinkDB
All DBs
Position
3:4356549..4363136
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AA seq
545 aa
AA seq
DB search
MAEARISQNEFMCPVCLDLLKDPVTIHCGHSYCKSCITDCWDQEDEKRVYSCPQCRQTFS
PRPALGKNTMLAEVVEKLRKTKLSPDCYAGAGDVQCDVCTGRKYKAVKSCLVCQESYCQT
HFDRHEEFHSRKPHKLIDATRRLQDMICRKHDKQLEMYCVTEQQCICVLCKEYEHKNHKI
VSTASQRTEKQKQLKEMQMKFEQRIQQRQKDLQQLRDSVASHKRSAQTAVEDSERIFTEL
ICSIERSRSEITQMIRDQEKTVVNQAEELIKKLKQEIYDMRRRNTELEQLSHTHDHIHFL
QSFRSLSAAPGSTDVSNVPFSSRFSFDKIKESVDQLRVKLEDFCKEEIKTICNRVTCINI
VPKTRNEFLQYSHQFTLDPNTVNKHLQLSEKNREITNTGTDHLYPDHPDRFDLYAYQVLC
RESVSGCCYWEVEWSGIVYISVSYKSISRKGSGNECFFGHNNQSWSLCCSPSKNSFRHNN
KRTDLPVESISHSIGVYVDHSAGTLSFYSVSDTVSLIHTVQTTFTQPLYPGFWVQTGSSV
KLLMN
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagctagaatttctcaaaatgagttcatgtgtccagtgtgtttggatctcctg
aaggatccagtgaccatccactgtggacacagttactgtaagagctgtattacagactgc
tgggatcaggaggatgagaagagagtctacagctgccctcagtgcagacagaccttcagc
ccaagacctgctttaggtaaaaacaccatgctggctgaagtggtggagaaactgaggaag
actaaactttctcctgactgttatgctggagctggagatgttcagtgtgacgtctgtact
ggaagaaaatacaaagctgtcaagtcctgtctagtgtgtcaggaatcttactgtcaaact
cactttgaccgtcatgaggagtttcactctcgtaaaccacacaaattgattgatgccact
agacgactgcaggacatgatctgccgtaaacatgataaacagctggaaatgtactgtgtc
actgaacaacaatgcatttgtgtgctgtgtaaggagtatgaacataaaaaccacaaaatt
gtatcaactgcatctcagaggacagagaaacagaaacagttaaaagagatgcagatgaag
ttcgagcagagaatccagcagagacagaaagaccttcagcagctgagagattctgtggcg
tctcataagcgctctgcacagacagcagtggaggacagtgagaggatctttactgagctc
atctgttccattgagagaagccgctctgagatcacacagatgatcagagatcaggaaaag
actgtagtgaatcaagctgaagaactcattaagaaactaaagcaggagatttatgatatg
aggaggagaaacactgagctggagcagctttcacacacacatgatcacatccatttcctg
cagagttttcggtctctttcagcagctcctggatctacagacgtttccaacgttcccttc
agttctcgcttctcttttgataaaataaaagaatctgtcgatcagctcagagtcaaactg
gaggatttctgcaaagaggagatcaagacgatttgtaacagagtcacatgtatcaacatt
gttcccaagaccaggaatgaatttctacaatattcccatcagttcactctggatccaaac
acagtgaataaacacctccagctgtctgagaagaacagagagattactaacactggcaca
gatcatctgtatcctgatcatccagacagatttgatttgtatgcttatcaggtgttgtgt
agagagagtgttagtggatgctgttactgggaggttgagtggagtgggattgtgtatata
tcagtgtcatataagagcatcagcaggaagggatcaggtaatgagtgtttttttggacat
aataatcagtcctggagtttgtgttgctctccctccaaaaactcattccggcacaataac
aaacggactgatctccctgtagaatccatcagccatagtataggagtgtatgtggatcac
agtgcaggaactctgtccttctacagcgtctctgacacagtgagcctcatccacacagta
cagaccacatttactcagccgctctatcctgggttttgggttcagactggatcatcagtg
aaactgttgatgaattag
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