Labeo rohita (rohu): 127159331
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Entry
127159331 CDS
T09007
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lroh04121
]
127159331
Ubiquitin system [BR:
lroh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
127159331
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
SPRY
zf-RING_UBOX
zf-B_box
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
U-box
zf-RING_6
zf-RING_5
PHP
DUF4407
Motif
Other DBs
NCBI-GeneID:
127159331
NCBI-ProteinID:
XP_050958150
LinkDB
All DBs
Position
3:4343940..4348798
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AA seq
543 aa
AA seq
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MAEARFSQNEFMCPVCLDLLKDPVTIHCGHSYCKSCITDCWDQEDEKRVYSCPQCRQTFS
PRPALAKNTVLAKVVEKLKTTLTSDCYAGAGDVQCDVCTGRKYKAVKSCLVCQESYCKSH
FDRHEEFFSHKPHKVIDATRRLQDMICRKHDKQLEMYCITDQQCICVLCKEYEHKNHKTV
STASQRTEKQKELKETQMKFEQRIQQRQKDLQQLRDSVASHKRSAQTAVEDSERIFTELI
CSIERSRSEITQMIRDQEKTVVNQAEELMEKLKQEIDDLRRRNTELEQLSHTHDHIHFLQ
SFRSLSAAPGSTDVSNVPFSSRFSFDKIKESVDQLRVKLEDFCKEEIKTICNRVTFINIV
PKTRNEFLQYSHQFTLDPNTVNKHLQLSEKNREITNTGTDHLYPDHPDRFNLFAYQVLCR
ESVCGCCYWEVEWSGAGGVYISVSYKSISRKGSGNECFFGHNDQSWSLFCFPSSYKFLHN
NKRTDLSVVSSSKIGVYVDHSAGTLSFYSVSDTMSLIHTVQTTFTQPLYPGFWVATRSSV
KLC
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagctagattttctcagaatgagtttatgtgcccagtgtgtttggatctcctg
aaggatccagtgaccatccactgtggacacagttactgtaagagctgtattacagactgc
tgggatcaggaggatgagaagagagtctacagctgccctcagtgcagacagaccttcagc
ccaagacctgctttagctaaaaacactgtgctggctaaagtggtggagaaactgaagact
acacttacgtctgactgttatgctggagctggagatgttcagtgtgacgtctgtactgga
agaaaatacaaagctgtgaagtcctgtctggtgtgtcaggaatcttactgtaaatctcac
tttgaccgtcatgaggagttcttctctcataagccacacaaagtgattgatgccactaga
cgactgcaggacatgatctgtcgtaaacatgataaacagctggaaatgtactgtatcact
gaccaacaatgcatttgtgtgctgtgtaaggagtatgaacataaaaaccacaaaactgta
tcaactgcatctcagaggacagagaaacagaaagagttgaaggagacacagatgaagttc
gagcagagaatccagcagagacagaaagaccttcagcagctgagagattctgtggcgtct
cataagcgctctgcacagacagcagtggaggacagtgagaggatctttactgagctcatc
tgctccattgagagaagccgctctgagatcacacagatgatcagagatcaggaaaagact
gtagtgaatcaagctgaagaactcatggagaaactgaagcaggagattgatgatctgaga
aggagaaacactgagctggagcagctttcacacacacatgatcacatccatttcctgcag
agttttcggtctctttcagcagctcctggatctacagacgtttccaacgttcccttcagt
tctcgcttctcttttgataaaataaaagaatctgtcgatcagctcagagtcaaactggag
gatttctgcaaagaggagatcaagacgatttgtaacagagtcacatttatcaacattgtt
cccaagaccaggaatgaatttctacaatattcccatcagttcactctggatccaaacaca
gtgaataaacacctccagctgtctgagaagaacagagagattactaacactggcacagat
catctgtatcctgatcatccagacagatttaatttgttcgcttatcaggtgttgtgtaga
gagagtgtttgtggatgctgttactgggaggttgagtggagtggagctggtggtgtctat
atatcagtgtcatataagagcatcagcaggaagggatcaggtaatgagtgtttttttgga
cataatgatcagtcctggagtttgttctgttttccctccagttacaagttccttcacaat
aacaaacggactgatctctctgtagtgtccagctctaaaataggagtgtatgtggatcac
agtgcaggaactctgtccttctacagcgtctctgacacaatgagcctcatccacacagta
caaaccacatttactcagccgctctatcctgggttttgggttgctactagatcatcagtg
aaactgtgttga
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