Labeo rohita (rohu): 127163724
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Entry
127163724 CDS
T09007
Symbol
sox5
Name
(RefSeq) transcription factor SOX-5 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lroh03000
]
127163724 (sox5)
Transcription factors [BR:
lroh03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
127163724 (sox5)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
MATalpha_HMGbox
Exonuc_VII_L
Motif
Other DBs
NCBI-GeneID:
127163724
NCBI-ProteinID:
XP_050963023
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All DBs
Position
4:32133990..32369290
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AA seq
764 aa
AA seq
DB search
MLTEPELPQEFNRMSSKRPASPYGGTDGEVVMATSRQRLEDEEVDGHAVIHLPLSSYCSK
VSPRSPRLLDSPPTLHANMDQDGSKGLALSPYPQHNSSTSPSKQQQQQEEGSMRPGSEPS
SASALGTPERRKGSLADVVDTLKQRKMEELIKNEPEEAPSIERLLSKDWKDKLLAMGSGN
FGEIKGTPDSLAEKERQLMGMITQLSSLREQLLAAHEEQKKLAASQIEKQRQQMELAKQQ
QDQIARQQQQLLQQQHKINLLQQQIQQVQGQLPPLMIPVFPPDQRTLAAAAAQQGFLLPP
GFNYKPGCSDPYPLQLIPTTMAAAAAATPGLGPLQLQQLYAAQLAAMQVSPGAKHSTVPQ
ANLATGTLSPTSGQSEKNRSTPPPKPKDEGAQPLNLSSKPKASESKSPTSPASPQVPALK
LGPGSLKHSAPSSIGGPPSRLSSIDLLSSITSGGYLNDHEAVTKAFQEARQMKEQLKREQ
QVLDAKVAAVNSLSLNNGRSEKDKAALESLSQQLKQSEESKFTHAMMDFGISGDSDGSPS
VSDSRIFRESRGRGSSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKA
MTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEM
RQYFTVGQQAQLPLSSAGVVYPGALSMAGMPSPQMPSEHSSMSSSPEPVPPTSQPSYLTH
KGEEPRIKEEELRMDDGNGDAYDDFDYEDDDGDYGSDSENHITQ
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgcttactgagcctgagcttcctcaggagtttaacaggatgtcttccaagcgaccagcc
tctccatatgggggaacagatggagaggtagtcatggcgacgagcagacagcgattggag
gatgaagaggttgacggacatgctgtcattcacttgcccctgagttcgtactgcagcaaa
gtgtccccgcgatctccacgactgctcgacagccccccaacactacacgcaaacatggat
caggatggcagtaaaggcctggccctgagcccctacccccagcacaactcgtctacctca
cccagtaagcagcagcagcagcaggaggaggggtccatgcggccggggagcgaacccagc
tccgcttcagctctgggcaccccggagagacgcaagggcagcctggctgatgtggtggac
acgctcaaacagcgcaagatggaggaactcatcaaaaacgagccagaggaggcccccagt
attgagaggctgttgtctaaggactggaaggacaagctattggccatgggttctggcaac
tttggagagatcaaaggcaccccggacagcctggcggagaaagagcgccagctgatgggg
atgatcacgcagctcagcagtctcagagagcagctactggccgcccatgaggagcagaag
aaactggccgcttcgcagatcgaaaagcagcgccagcaaatggagttagcgaaacagcaa
caggaccagattgcacgacaacagcagcaacttctgcagcaacaacacaaaatcaacctc
ctgcagcaacagatccagcaggtccagggtcagttgcccccactgatgatacccgtgttc
cctccagatcagagaactctggcggccgctgcagcacaacaaggatttctacttccgcca
gggttcaactacaaaccaggctgcagtgacccttaccctttacagctaattcctacgact
atggcagcggctgctgcggcgacgcctggccttggtcctcttcaactgcagcagttgtat
gcggctcagctagctgccatgcaggtgtctccgggggccaaacacagcacagtgcctcag
gccaacctggcaaccggaacactctcgcccaccagcggccagagcgagaaaaacagaagc
accccgccaccaaagcccaaggacgagggcgctcagcccttgaatctgtcgtccaagcct
aaggcatccgagagcaagtcacccacctcccccgcttccccacaggtccctgccctgaag
ctgggccccgggtccctgaagcacagcgccccctccagcatcggaggaccgccgtccaga
ctcagctccatagacctgctgtcgtccatcacctctggcggctacctgaatgaccacgag
gccgtgaccaaagctttccaggaggccagacagatgaaggagcagctaaagagagaacag
caggttctagacgccaaagtagcggcagtcaacagcctgagcctcaacaacggtcgctca
gaaaaggataaagccgctcttgaaagcctgagccaacagttaaaacagtctgaagagagc
aagttcactcacgcaatgatggactttggcatcagtggcgattcagatggaagccctagt
gtgtcagactcacggatcttcagagagtctcgagggcgtggcagcagcgaaccacacatc
aagcggcccatgaacgccttcatggtctgggctaaagacgagaggagaaagatccttcag
gccttccctgacatgcataactcaaacatcagcaagatcctcggctctcgttggaaggcc
atgaccaacctggaaaagcagccatactatgaagaacaggcccgtcttagtaagcagcac
ctagagaaatacccagactacaaatacaagccgcggcccaaacgcacctgcctagtggat
ggaaagaaactgcgcataggtgaatataaggccatcatgcgcaaccgcagacaggaaatg
cgccagtacttcaccgtagggcagcaggcccagttgcccttgtcctcagcgggcgttgtg
tacccaggcgccctctctatggcaggaatgccctccccacagatgccctccgagcactca
agcatgtccagtagccccgaaccagtcccacccaccagccagccctcctacctcacacac
aagggggaggagcctcgcataaaggaggaggagctccgaatggacgacggcaacggcgac
gcctacgatgacttcgactacgaagacgacgacggggactacggcagcgacagcgagaat
cacatcactcagtaa
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