Labeo rohita (rohu): 127166112
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Entry
127166112 CDS
T09007
Symbol
gtf2h2
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03022
Basal transcription factors
lroh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127166112 (gtf2h2)
09124 Replication and repair
03420 Nucleotide excision repair
127166112 (gtf2h2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lroh03021
]
127166112 (gtf2h2)
03400 DNA repair and recombination proteins [BR:
lroh03400
]
127166112 (gtf2h2)
Transcription machinery [BR:
lroh03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
127166112 (gtf2h2)
DNA repair and recombination proteins [BR:
lroh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
127166112 (gtf2h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
HscB_4_cys
Motif
Other DBs
NCBI-GeneID:
127166112
NCBI-ProteinID:
XP_050967155
LinkDB
All DBs
Position
5:complement(30939261..30945939)
Genome browser
AA seq
392 aa
AA seq
DB search
MDEEPERAKRWEGGYERTWEVLKEDESGSLKATVEDILFQAKRKRVFESHGQVRLGMMRH
LFVIIDASRSMEDQDLKPNRLTSTLKLMEYFVEEYFDQNPISQIGIITTKNKRAEKLTDL
AGNPKKHIAALKKAVDSTCVGEPSLYNSLNLAMQTLKHMPAHTSKEILVIFSSLTTCDPA
NIYELIKTLNGLKIRVSVIGLSAEVRVCTILTRETGGSYNVILDESHFKELLMLHVKPPP
ASSSSECSLIRMGFPQHVIASMSDQDAKPSFSMSHLDSAGEPGLTLGGYYCPQCRAKYTE
LPVECKVCGLTLVSAPHLARSFHHLFPLEAFQETPLEEYDGERFCEACQEEFQDKSVFTC
LACKKVFCVECDLFIHDTLHCCPGCMQTDRTS
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagaaccagagagagcaaaacgctgggaaggaggatacgaacgaacatgggag
gtgctgaaggaggatgaatctggatctctcaaagctactgtggaggacattcttttccag
gcgaagaggaaaagagtgtttgagagtcatggacaagttcggcttgggatgatgcggcac
ctctttgtgatcattgacgcatctagatcaatggaagatcaggacctgaagcccaacagg
ctcacctcgaccttgaagctaatggagtattttgtggaggagtactttgaccagaatcca
atcagtcagatagggatcattaccacaaagaacaagagggcggagaaactcactgatctt
gcaggaaaccctaagaagcatatagcagctctgaagaaagcagtggactccacgtgtgtt
ggggaaccatctctctacaactctctcaacttggctatgcagactcttaaacatatgcct
gctcatacaagcaaggagatcctggttattttcagcagtcttactacctgtgatccagcc
aacatctatgagcttatcaaaactctgaatggtctgaagatcagagtgtctgtaatcggc
ctgtcagcagaggttcgagtgtgcaccattctcacaagagaaactggaggatcctacaat
gtgatattggatgagagtcattttaaagagctgctgatgctgcatgtgaagccgcctcct
gccagctcctcctcagagtgctccctcattcgcatgggtttccctcagcatgtcatagcc
tccatgtctgatcaggatgccaaaccctcattcagcatgtcgcacttagacagtgctggt
gagccaggactcactcttggcggctactactgcccacagtgcagagccaaatacactgag
ctgccagtggagtgtaaagtgtgtggtttaactttagtttccgctcctcatctggcccgt
tccttccatcacctcttcccgcttgaggccttccaggagaccccactagaggagtatgac
ggcgagagattctgtgaggcttgccaagaagagtttcaagacaaaagtgtgtttacatgt
ctagcatgtaaaaaagtgttttgtgtggagtgtgatctcttcatacatgacacactgcac
tgctgtcctggctgcatgcagaccgacaggacgtcctga
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