Labeo rohita (rohu): 127166377
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Entry
127166377 CDS
T09007
Symbol
chd6
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 6 isoform X1
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lroh03036
]
127166377 (chd6)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
127166377 (chd6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Chromo
BRK
ResIII
CHDCT2
DEAD
HDA2-3
Motif
Other DBs
NCBI-GeneID:
127166377
NCBI-ProteinID:
XP_050967543
LinkDB
All DBs
Position
6:complement(31296222..31361634)
Genome browser
AA seq
2963 aa
AA seq
DB search
MSGAGVSRRRHKDQEKMKIQKKDKQMSAAHVLKHTPSAAASNASDQNAQTTFPIGHLGKE
QLRIIGGPPNHCMAHPKHSGLREAGSAASSHSLRPLSINSEEDDGGGGTRVKKKRRKKDK
KESEWHKGEESNAKPKRREQKEGKELLPRKSKAVKEQKVHKKRETKAQKEVKKVKKGQDV
KAKTQAKNTATHPPSKRGRKPKEQGAMPPEKKKKGKRKSDAVLEMVESDDTTSLSTLATG
EESIDPMDNTKRRSGRQVKRRKYNEDLDFKVVDDDGETIAVLGTGRIAAMSSSTLAWQAE
EPPEDEANIIEKILAVRTVKKETSPDEPPEDMEEFYVKYRNFSYLHCKWATLEELEKDPR
IHQKIKRFRNKQAQMKHIFTEPDEDLFNPDYIEVDRVLEIAITTDTETGEEVTHYLVKWC
SLSYEESTWELQEDVDPVKIREFEDLKQIPEIKHVERPLPEQWQKLEKSREYRNGNQLRE
YQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLYEIFLMGLRGPFLIIAPLSTITN
WEREFRTWTEMNVIVYHGSQISRQMILQYEMYHRDEQGNIVSGQFKFHGIITTFEMIMAD
CPELKKLNWRCVVIDEAHRLKNRNCKLLEGLKLMNLEHKVLLTGTPLQNSVEELFSLLNF
LEPSQFPSETTFLEEFGDLKTEEQVKKLQAILKPMMLRRLKDDVEKNLAPKEETIIEVEL
TNIQKKYYRAILEKNFAFLAKGANQHNMPNLINTMMELRKCCNHPYLITGAEEKILESFK
KTYSSEAADFQLQAMIQAAGKLVLIDKLLPKLLAGGHKVLVFSQMVRCLDILEDYLIQRR
YTYERIDGRVRGNLRQAAIDRFSKVDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNP
QNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGSLNG
VQQLSKMEVEDLLRKGAYGALMDEEDEGSKFCEEDIDQILQRRTQTITIQSEGKGSTFAK
ASFVSSGNRTDISLDDPNFWQKWAKIAELEIDSKAEKESLVIDTPRVRKQTRHYNSFEDD
ELMEFSELDSDSEERPCRTRRLSDRNRRYLRAECFRVEKNLLIFGWGRWKDILNHGRFKW
HLTERDMEVLCRALLVYCVRHYKGDDKIKSFIWDLITPTKDGHNQALQNHSGLSAPVPRG
RKGKKLKNQLSPPELKNADWLAHCNPEVVLQDDSYKKHLKQHCNKVLLRVRMLYYLKVEV
LGEAANQSLEGIPASKLEVTLPDIDYIEIPTIWWDAEADKSLLIGVHKHGYERYNAMRAD
PALCFLERVGMPDVTALTVEQGGVETASDAPDSISKSDEIKEESDVKSEDLEEKIDIKEE
PMSEETGKNDNTVTGGFIGSLAGDLVAEVMEQGRIQWPAGSSLTARLRRLITAYQRYTRR
EPLRHDFLLHEGIAPVAWQIGEFRHCTTEPDPLFLEWQRRWTRREQADFYRTVSSFGVVY
DPEKKTFDWNQFRALARLERKTDESLERYFHSFVSMCRTACRLPPRKDEGSVDPSLFVEP
ITEERAARTLYRIELLRKVREQVLRHPLLGARLQLCRPSLYLPVWWECGKHDRDLLIGVA
KHGLSRTDFYILNDPQLSFLEAHRNYVHKENHRYPVPGLPHHHCCLYDASLGHCHSPQPP
EYHPSPSHHTPTQLVHTHGHHQSTEVVASESGSSLGIVTGNREGYLDCPPLDDSLELGSL
QHEGLTSDTLHGKSGKEAFNGFPFNSATGGQNMLNSYGVQGELNGSQGDMADSIAGKLRS
DVLVGEQGSSEETGLMAPSVELDELQTPWESSDHAETSDMFNETDPILGAQTLEPSFLDA
PQPEDGREGDETLTDCLSMPSSDSQSNPVEPLAPSFMLFKDLNVGETSVDQTDLSASLPE
YVPPPPLGLPDVSLDQTDPISEEQEDKLSDSNITHGVPSPEEGAESVGFHFEKEDLSPDS
PKTKDTQDEIDKMPSIESPRNNCLEESQKVECKVQFDDSNGDPCEVALEEPYEKPLTEPE
KVPLEEAYDLTCDETLQEPCEGFQQDTEEQQLVEEPSKEPSEPMEECNLTNTTLSTDYPM
PSSLPSSPTTLPDTSASPGLDTVPKQDFLVDPVVSEVKPEPDSTTQTPHLEQTEVLEVKD
KIKDEGAKAPALLGDVDGPRFALPICEIADSVHEIREPTIAQLLQEKALFSFSEWPKDRV
IINRIDSICHTILKGKWPSSSQQFESPTSLANTCVPSSAQQRAGFLPTRMPISQSLNFNL
PHTVSHLPKERLVAPAFLPELKRPRRGFEFEAEVLAKPSHLGEKIQVGVPHRANALLLNG
WQDAAIDLSKPTELTVGGDSGPIGQMSHTVQSAPHKITGIGSIQSSLGLDMAGILQAGLI
HPVTGQIVNGGLRRDDSMLRRRRGRRRNVETPDLSFIKGRSVNLPEQQSGSESISHPVVS
STSSQSEGPPATPTTLSSHPPSASPAPPPVAETLNVSMDRETANKGLMEWLRQNPNYNME
LSAFPSQNASMLHSFLERPKQRRHRCKDPSKLDINSLTGEERVPVVHRNTGRRLGGAMAP
AIKELSRWLDANSEYSVAPDWADVVKHSGFLPEGKFTRILSAPVCRDPGPRRRGRRPRTE
MPKAPELPAGMGPLFMNGGLIGSMDLVSLPNLRNVPGIPLTGIMGFPHGFATAVPSGEDG
KNGLSMLPMMLHSMAAVQPPMYSAHMSGMMTQPLSTATSTTSTATASSTTASVTSTNSAT
VTSTSSPADSSDSAPQRENASSPMSTENGNKEDAKQAGEEKKVSASVSTAAATSSSSSSI
TSTGSHLTFNPFLIPGMSHSLLYPHMFLPPGSIMALPAMPAADSTGSPKRKRKKVREEGP
EEGSTNVGVHIDGVESKDEQTPEQKSQEGGMEEGRPEVNLAQVKDPSDPIKDPSKDRSTE
EKDKNELGEEPELNTQGSCDGED
NT seq
8892 nt
NT seq
+upstream
nt +downstream
nt
atgtccggagccggcgtgtccagacgcagacacaaagatcaagaaaaaatgaaaatacaa
aagaaggacaagcagatgtctgccgctcatgtactaaagcacactccatccgctgctgcc
tcgaatgcctctgaccaaaacgcacaaactacatttcccatcggccacttgggcaaagaa
cagttacggatcatcggagggccgcccaatcactgcatggctcacccaaagcactctggg
ttacgggaggcggggtctgcggccagcagtcacagtctccgccctttatcaatcaacagc
gaggaggacgatggagggggcgggaccagggtgaagaagaaacgaaggaaaaaagacaag
aaggagtcagagtggcacaaaggtgaagagagcaatgctaaaccaaagagaagggagcaa
aaggaagggaaagagcttcttcccagaaagtcaaaagcggtgaaggaacaaaaggtgcat
aagaagagggagacgaaagcccaaaaagaggtcaaaaaagtcaagaaaggtcaagatgtg
aaagcgaaaacacaggccaagaacactgcaacacatccaccctccaaacgagggaggaag
ccaaaagagcagggtgccatgcctccagagaagaagaagaagggaaagaggaaaagtgat
gctgtacttgagatggtggagagcgatgacacgacctctctcagcacgctcgccaccggc
gaggaaagcatcgaccctatggataacactaagaggcgatcagggcgtcaagtgaagcga
cggaagtataacgaagatcttgatttcaaggtcgtggatgacgacggggagaccatcgcc
gtgttgggcacgggccggattgccgccatgtcttcctctaccctcgcctggcaggctgag
gaaccccctgaggatgaggctaatatcattgagaaaatactcgcagtacgaacggtcaag
aaagagacatcccctgacgaaccaccagaagacatggaggagttttacgtcaagtacaga
aatttctcctatctgcactgtaaatgggcgaccttggaggaactggagaaggacccacgc
attcaccaaaaaatcaagcgcttcagaaacaagcaggcgcaaatgaagcacattttcaca
gagccggatgaagacctgtttaatccagattatattgaggtcgatcgggttttagagatt
gctatcaccacagatacagaaacgggagaggaagttacacactacctggtgaaatggtgc
tctttgtcatatgaagagagcacttgggagcttcaggaagatgttgaccctgtgaaaatc
agggagtttgaagacctcaagcaaattccagaaatcaagcatgtggaaaggcctctcccc
gaacagtggcaaaaactggagaagtccagagaatacaggaatgggaaccagctgcgagaa
taccagttagagggaatgaattggctccttttcaactggtacaacaggaagaactgtatt
ctggctgatgagatgggactgggaaagaccatccaatccatcacattcctctatgagatt
ttccttatgggtctgaggggacctttccttatcatcgccccgctgtccaccatcaccaac
tgggagagagagttccgcacatggactgaaatgaacgtcatcgtctatcacggcagccag
atcagtcgacagatgatcctgcaatatgagatgtaccatcgagatgaacagggaaacatc
gtgtctggtcagtttaagtttcatggcatcatcactacatttgaaatgataatggctgac
tgtccagagctgaagaagcttaactggcgctgtgtggtgatcgacgaggcccatcgcctg
aaaaatcgcaactgtaaactgctggagggactcaaactcatgaacctggaacataaagtt
cttctcacaggaacccctttgcagaactcggtcgaggaactcttcagtctgcttaacttt
ctcgaaccctcacagtttccttctgagactactttcctggaggagtttggagacctgaag
acggaagaacaggtaaagaaactgcaagccattctgaagcccatgatgttgaggagattg
aaggatgatgtggagaagaatctggcccctaaagaggagacaatcattgaggtggagctc
actaacattcagaagaaatactaccgtgcaattctggagaaaaactttgccttccttgcc
aagggagcaaaccagcacaacatgcccaacctcattaacacaatgatggagcttcgcaag
tgctgcaatcacccatacctcattacaggtgctgaagaaaagatccttgagagcttcaag
aaaacctacagttctgaggctgcagattttcagctgcaggcaatgattcaggctgctggt
aaactagtgcttattgacaagttgctgcccaaactgctggccggaggacataaagtgctg
gtgttttcccagatggtccggtgcctggatatactggaggactacctcattcagaggagg
tatacgtacgagcgcattgatgggagagttcgagggaatctacgacaggctgccatcgat
cgcttcagtaaggtggactctgaccgcttcgtgttcctcctctgtacacgagcaggaggt
ctgggcatcaacctcaccgccgccgacacctgcattatattcgactcagactggaacccg
cagaacgacttgcaggctcaagcgcgctgccaccggatcggtcaaagcaaagcggtgaaa
gtatatcgccttattacacgaaactcatacgagagggagatgtttgacaaggccagtttg
aaactgggattggacaaggctgttctgcaggacatcaaccgcaaaggcagtctcaacggg
gttcagcagctgtctaagatggaggtggaagatcttctcaggaagggagcgtacggggcg
cttatggacgaggaagatgagggctcaaaattttgtgaggaggatattgatcagatcctg
cagcgacgcacacagaccatcacaattcagtctgaggggaagggatcaacttttgccaag
gctagctttgtgtcttcagggaaccgtacagacatctctctggacgatccaaacttttgg
cagaagtgggccaaaattgctgaactggaaattgactccaaggcagaaaaggagagtctg
gtgatcgacacccctcgcgtacggaagcagacgcgtcactacaactcttttgaggacgat
gaactgatggagttctccgaactggacagcgactcagaggaacgaccctgtcgcacaaga
cgtctcagcgatcgcaacagacgctacctccgagcggagtgcttcagagtggagaagaac
cttctcattttcgggtggggtcgctggaaggatattctcaatcatgggcgttttaaatgg
cacctgacggagagagacatggaggtgctgtgcagagctcttctggtctactgtgttcgc
cattataagggcgacgacaaaattaagagcttcatctgggatctgatcacacccactaaa
gacggacacaatcaagcactacaaaaccactcaggtctgtctgctcctgtcccgcggggt
cgtaaaggcaagaagctgaagaaccagttgagtccacctgagctgaagaatgcagactgg
ctggcccactgtaacccagaggttgtgcttcaagatgacagctacaagaaacacctcaaa
cagcactgcaacaaggtgttactgagggttcggatgctgtactatctgaaggtcgaagtg
ctgggggaggctgctaatcagtctcttgaagggatcccagccagtaaactggaggtaaca
ctccctgatatcgactatattgagatccctactatatggtgggatgctgaagcggataaa
tcgctgcttattggagttcacaaacatgggtatgagcggtataacgccatgcgtgcagac
cctgctctgtgtttcctggagcgagtgggtatgcccgatgtcactgcattgacggtagaa
caagggggagttgaaactgcttcagatgcacctgatagtatcagcaagagtgatgaaatc
aaagaggagagcgatgtgaagtctgaggacttagaagagaaaatagatatcaaggaggaa
cccatgtcagaggaaacagggaaaaatgacaatacagtgacagggggatttataggatct
ctcgcaggagaccttgttgcagaagtgatggagcagggacggatacagtggccggcaggc
tcgtctctcacagcacgtctacggcgcctcattactgcctatcagcgttatacgcgccgt
gagccacttcggcatgatttcctcttacacgagggaattgcacctgtggcctggcaaata
ggagagtttaggcattgcactactgagcctgacccactctttttggagtggcaacgaagg
tggacacgtcgagagcaggctgacttctatcgcacagtgtcctcgtttggagtagtgtat
gatccagagaagaagacctttgactggaaccagttccgtgcccttgctcgattggagagg
aagacggatgaaagcttagagagatatttccacagctttgtttcaatgtgtcgaactgca
tgtagactgccgcccagaaaagatgaaggtagcgtggatccttcactgtttgtggagcct
attacagaagaacgagctgctcgaacattatatcgtatcgagcttttgagaaaggtgcgt
gagcaagtattgcgccatccgcttctgggagcacggctgcagctttgtcgcccaagtctg
tacttgcccgtctggtgggaatgtggcaaacatgaccgtgatcttcttattggggttgcc
aagcatggcttaagtcgaactgatttctacatcctcaatgacccccaattatccttcctg
gaggcccaccggaactatgttcataaagaaaaccacagatatccggtcccagggttgccc
caccaccattgctgcttgtatgatgccagccttgggcattgtcattccccacaacctcca
gaatatcacccctcaccttcacaccacacgccaacacaacttgtccatactcatgggcat
caccagtccacagaagtggtggcatcagagtctggaagttcccttgggatagttacagga
aacagggagggatatttggattgccctccactggatgactctctggagttggggtcttta
caacatgaagggttgacgtcagatacactacatggcaagtctggtaaagaggccttcaat
ggattccccttcaattctgcaaccggtggacagaatatgctaaattcatacggtgtgcaa
ggggagctaaatgggtctcaaggagacatggcggactccatagctgggaaacttcgcagc
gatgttctagtgggagagcaaggctcctcagaggagactggcttaatggctccttctgtg
gaacttgatgaacttcaaactccttgggaaagctcagaccatgctgaaacctctgacatg
ttcaacgagactgatcccatcttgggagcgcaaactttggagcccagctttctcgatgct
cctcaacctgaagatggacgggagggtgatgaaacgctcacagactgtttgagcatgcct
agttcagactctcaaagcaaccctgtcgaaccactggcgccaagctttatgttattcaaa
gaccttaacgttggagagacttctgtggatcagacagatctatcagccagtcttccagaa
tatgttccaccaccacctctcggactcccggatgtgagtcttgaccagacagatcccatt
agcgaggagcaagaggacaagcttagtgattccaacatcacacatggcgttcccagtcca
gaagaaggagctgaaagcgtaggctttcattttgagaaggaagacctttctccagacagt
ccaaagacaaaggatactcaagatgagattgacaagatgccttcaatagagtctccaaga
aacaattgtctcgaggaatcccagaaagtggagtgcaaggtgcaatttgacgattccaat
ggagatccttgtgaagtggccttggaagaaccttacgaaaagcctctaacagagccggaa
aaagtgcctttagaggaggcttatgatttgacttgtgacgaaaccttgcaggagccttgc
gaagggtttcagcaagacacagaggaacagcaattggtggaagaaccctccaaggaaccg
tcagagccaatggaagagtgcaatttaactaacactaccctctcaacagattaccctatg
ccttcttcactcccatcatctccaactaccttacctgacacctctgcatccccgggtctt
gacacagtcccaaaacaagattttcttgtagatccagtggtgtcagaagtgaaacctgag
ccagatagcactacgcagacccctcaccttgagcagactgaggttttggaagtaaaggac
aagataaaagatgaaggtgcaaaggcaccagcgttattgggagatgttgatggaccacgt
tttgcattgcctatatgtgagatagcagacagtgtccatgaaataagggagccaaccatt
gctcagcttctacaagagaaagcactcttttccttctcagagtggcctaaggacagagtg
atcatcaaccgcattgacagtatctgccacactatcttaaaggggaagtggccttcctct
agtcaacagtttgagtctcccacctcattggctaacacctgtgtgcccagcagtgcccag
cagagggcaggatttctgcctaccagaatgcctatatctcagagccttaacttcaacctc
ccacacacagtatcccacttaccaaaggagcggttagtggccccggcgtttctccctgag
ctcaaacgtcctagacgtgggtttgaattcgaggcagaagtccttgccaaaccaagccat
cttggtgaaaagatccaagttggcgtgcctcatcgtgctaacgctcttctccttaatggc
tggcaggacgccgctattgacctctccaaaccaacagagctaacagttggtggcgacagt
gggccaatcggtcagatgagccacactgtccagtcagcgccccataaaataactgggata
ggctccatacaaagctcactgggattggatatggctgggattttgcaggctggcctgatt
caccctgtcacggggcaaattgtcaacggcggtcttcgtcgtgatgattcaatgttgaga
cggagaagaggacgaagaagaaatgtggagactcctgatctcagctttattaagggacga
agtgtgaacttgcctgaacaacagagcgggtctgagagtatcagccaccctgttgtgtcc
tccacatcctcccagtccgaaggccctccagccaccccgactacactttcgtctcaccct
ccgtcagcctctccagctcctcctccagtcgcagaaaccctgaatgtgagcatggacagg
gaaacggcaaataaaggcctaatggaatggctccgacaaaaccccaactacaacatggag
ctgtctgctttcccgtctcagaatgcaagcatgttgcacagtttcttggagcgtccaaag
cagagaaggcatcgctgcaaagacccatccaagctcgacatcaactctttaactggggag
gagagagtcccagtagtgcacagaaacacaggccgcaggcttggtggcgctatggctcca
gccattaaagagctctcccgatggctggatgcaaactcagaatactctgtggctcctgat
tgggcagatgtggtgaagcactcgggtttcctcccagagggcaaattcacacgcatcctc
tctgcacccgtgtgtcgggatcccggcccacgtaggagaggcagacgaccccgcaccgag
atgcccaaagcccccgagctccccgctggcatgggtccgctcttcatgaatggtgggctc
attggcagcatggatctggttagcttacccaatctccgcaacgtccctggcatcccgcta
accggtatcatgggctttcctcacggttttgcaaccgccgtaccgtcaggagaagatggc
aagaatggcctcagcatgctgcccatgatgcttcacagcatggcggccgtacagccgccc
atgtacagcgctcacatgagtggaatgatgactcaaccgctgtccaccgcgacgtccacg
acgtccactgcaaccgcgtcctccacaacagcgagcgtgacttctacgaactctgcaacc
gtaacctcaacctccagcccggccgatagttcggattctgcgcctcagcgtgaaaacgca
agctctccgatgagcacagagaacgggaataaggaggacgcaaagcaagcaggggaagag
aagaaagtgtccgcttcggtgtctacagctgcggccactagcagcagtagtagtagcatc
acaagcaccggcagccatttgacctttaacccctttcttatcccgggaatgtcgcatagt
ctgttgtatccgcatatgttcttgccaccgggcagtataatggctctacccgctatgccc
gcagcagacagcacgggcagccccaagaggaagaggaagaaggttagggaggaaggacca
gaggagggaagcaccaatgttggtgtgcatatagatggtgtggaatcaaaagacgaacag
acacccgaacaaaagagccaagagggcgggatggaagaaggcagacctgaggtaaattta
gctcaggttaaagatccttctgaccctataaaagatccttccaaggatagaagtactgag
gaaaaggacaaaaacgagttaggagaggaacctgagctaaacactcaaggctcatgtgac
ggtgaagactag
DBGET
integrated database retrieval system
