Labeo rohita (rohu): 127168602
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Entry
127168602 CDS
T09007
Symbol
frem1a
Name
(RefSeq) LOW QUALITY PROTEIN: FRAS1-related extracellular matrix protein 1a
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127168602 (frem1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Lectin_C
Calx-beta
Big_9
Motif
Other DBs
NCBI-GeneID:
127168602
NCBI-ProteinID:
XP_050971567
LinkDB
All DBs
Position
7:complement(5287379..5331851)
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AA seq
2167 aa
AA seq
DB search
MTAKHRTCLSFLLLGLVQQIQGSLVKTNLGLKVKRGQSVYLQEEDLQFHIPRARDACKLE
VVLNEPITQRVGTLSPQVFDCHFLADEVKYTHNGCPILKEDTVKLRLYRFTETETYSELF
SLRVEIMEPDCNVIKFGSQNLEVPEFYGLSNVLDGNVVSFHYEHRHNIECTVRLTTLETH
LPVHGQLVTGEPEKPEGPRGDEPDSFVSLRRQLDNKARANCKSDDCLKGLKLLKITKVPC
NDFLLMGIRYQHIDPPSPDIDYIAIRLDLTDTRSRSIIQSEQAWIPVTIKDAMPNQPPKP
AFMSMFILEVDQFILTPLSTATLDAEDDETPKQRLVFNITKAPXEGFITHLSDHTKPISS
FTWTDLNDMLISYQPPNSSHTQRRNYEVEFEVHDFYFEKSQPVIVHVSIRTADTNAPRVS
WNMGLSLLEGQSRPVTWDQFQIVDNDNLRAVKIITVDGLQHGRLTVRGGKGFMFTVNDIK
DSAVRYHHDDSDTTKDYIVFRITDGLHQTRHKFPINILPKDDSPPFLITNMVLELAEGQT
ALLRGSILQACDMDSSDDYIMFNITRPPQAGEIMKMPGPGNTGYPVTRFLQKDLFHSIIY
YRHSGSEVFDDSFEVVLSDFHDPPNLSEPQVIVIQIQPVPDQPPQEAPGVTRHLVVNETD
VIYLTKQQLHFVDLESPDSELTYTVTTPPFYTTTYGDSDAGRLFLVDSIPKFTKDPNAPM
LRLFTQHAVNYMKVAYMPPIVDIGPYPQHIQFVLSVTNQQGSTTTGICFNVTILPVDNLP
PEVHVKPLTVDEGGESCVSEDHMRLSDKDSLQDSLHVELKTGPQHGSIYLDGTPMSPGQT
FTVRELKSLKVRYRHDSSETEHDDIKFIVTDGINIADFVLHVKVTLVNDEVPVLVPGLKP
ILVCAEGQEVQITIEYICATDPDSDDSTLIYMIARQPYHGVVQRNGIIVDRFIQADVTAG
LISYRHTGQEIGLQPRHDVITFVISDGESGLFPSCCGDRVTIFNAQTPEVQNALPVYDLN
ITVYPVNNQPPSIAVGEVFMVDEGGSASITVTHLRVEDQDSAPEDLNFILVAPPQFGYIE
NVLPSPGFEKSNMGISIASFTYRDVLNGHINYVQSRHQRMEPTTDQLMLHVFDGKQQSSS
VPFYIIIRPTNDEIPDFLARNITVREGDMKELDPSIISAVDLDVPRDRLMFSIVQRPQHG
SIMSVPHGNDLTHYKRGSEIPVEHFTMDNLRNGMSLMYMHDGSESEQDGFIVQLSDGKHQ
LQKHVRVKVLPVNDEEPQIVRNTGLEMEAGESRLISSAVLSAHDKDTPSSDIIYVFESVP
SHGVIQMKVGTDWVSVSAGMNCSQQVLDMNLLRYLHTGHPGAAAADFFVFHLLDGKNRSP
AQHFHITVKELEKGDIALCLKPVRTSRGERVILTTDVLLAVDGTDKPEELLYVITAPPAH
GYVEYIKHTGVQIQSFSQLDVAANLVCYVHDNRATSPKETLQFIVSNGISTRNGTLEIFV
EMTDKVLPTLVRNTGLWVPQGSTMTLTSDVLFLSDPDSPHTALSYRVLQPPQYGQLLLKG
QSLVTGRNFTQQNIQDLDVAYRHSGGASQIDRFKFTASDSTKRGFLLDGKVQTEPVFFTL
QIEALDSAAPQMAVLETLWKVEILKDGRYGIFISSRELKAQDLNSADVDLIYHILRAPYF
GYLENYTTGEFVRQRFSQRDLNRRNIVYIINCAQDTLTDSLEFAVSDALGNTGASHKLEF
SWASVQLTRTEYVICESQGSVALTIQRKGNVQDSSYVTVQVKELTASAGKDFIPASSLIQ
FDPGMVSRVWKVEIVQDSLEEADEKFEVSLVSPVAAVLKDNSKATIFIKDTNGQCRKNRF
EADTGLRGEEVQPGPYPQHGSIQVEMLPFSQGHIRGDGDITVQAPTATKKRLRVTGNRKV
VQPSETIRQGSDVIYKYHGIMSMAVEEDSADSRSDRKAQVQVTSWGQQRSPHERTKPQQT
VPHTNTRLLQHLVTQPSSKPCTPELTGFLHYNESTAQLFRCNGDTWRPWTPTNETVKAQK
CPQAWTYHNNYCYILSTERKATWSAAARACRESYNGNLVSVLSKGDMDWLWDFSERKPFW
IGLNDRDNKSRWEWVGGEPVTYTNWRRSPPKNRKGTRRCVLVWRKTKWQIRDCKNGKGHR
YVCHVKM
NT seq
6504 nt
NT seq
+upstream
nt +downstream
nt
atgactgcaaaacacaggacatgtttgtctttcctcttgctgggtcttgtccagcagatt
cagggatctctggtgaaaaccaaccttggtctaaaggtgaagcgaggacagtcagtctac
ctgcaggaggaagatctgcagtttcatatacccagagccagggatgcctgcaaactggaa
gttgtgctgaatgagcccattacacagcgggtcggcacactgagccctcaggtttttgac
tgtcactttttggctgatgaagtgaaatacactcataatgggtgtccgattttaaaagaa
gatactgttaaacttcgtctgtacagatttacagagacagagacgtacagtgagctgttc
tctctccgtgttgaaatcatggagccggactgtaatgtgattaagttcggatcacagaat
cttgaagtgccagagttttatggcctctccaatgttctggacggcaacgttgtgtccttc
cactatgaacaccgacataatattgagtgcacggtgcggttgacaactttggagacacat
ctaccagttcacggtcaactagtcactggggaaccagagaaaccggaggggccgagaggg
gatgaaccagacagctttgtttctctacgaagacagctggataataaagccagagccaac
tgtaagagtgacgactgtctaaagggtcttaaacttctgaagatcaccaaagtaccatgc
aatgatttcctgttgatgggcatccgttaccagcacattgaccctccatctccagacata
gactacatcgccattagactggacctcacagacacgcgcagcaggagcataatccagtcg
gagcaggcctggatcccggtgaccattaaggatgcaatgcccaatcagccgcccaagcct
gcgtttatgtccatgttcatcttagaggtggaccagttcatcctgactccgctctccaca
gcaactttagacgcagaggacgatgagacgcccaaacagaggctggtgttcaacatcact
aaagccccangcgagggcttcattactcacctgtcggaccacaccaaacccatctcctcc
ttcacctggacggatctcaacgacatgctgatcagctaccagcctccaaactccagccac
acacagcgcaggaactatgaggtggagtttgaagtgcatgatttctactttgagaaaagc
caacctgtgattgtacatgtgtcaatcaggacagctgataccaatgcaccaagagtatca
tggaacatgggtctcagtctgttggaaggtcagtctcgtccagtcacatgggatcagttt
cagattgttgacaatgacaacctgagggctgtgaagatcatcacagttgacggcctgcag
cacggcagactaactgttagaggtggaaaaggtttcatgttcactgtgaacgatattaag
gacagcgcagtgcgctatcaccacgatgacagcgacacgactaaagattatattgtcttc
cgcattactgatggtttgcatcaaaccagacacaagtttcccatcaacatcctgcccaaa
gacgacagcccgccctttctcattaccaacatggtgctggagttggctgaaggtcagacg
gctcttttgagagggtctattttgcaggcctgtgatatggactccagtgatgactacatc
atgttcaacatcaccagacccccacaggcgggagaaatcatgaagatgcccggtcctgga
aacacaggataccctgtgacccgttttcttcagaaggacctcttccattccatcatctac
tatcggcactcaggcagtgaggtgttcgatgactcttttgaggtggtgctctccgacttt
catgaccctcctaatctatcagagcctcaggtcattgtgattcaaatccagccagtccct
gatcagcctccacaagaggcaccgggtgtaaccaggcacttggttgtcaacgagaccgat
gtcatctacttgaccaagcagcagctgcactttgtggacttggagtcaccagatagtgag
ctcacgtacaccgttaccaccccacctttctacaccactacctatggagactctgatgca
ggaaggctgtttctggttgatagcatccctaaattcaccaaagacccaaacgctccaatg
ctgagacttttcactcagcatgcagtcaactacatgaaggttgcttacatgccccctatc
gtggacattggaccataccctcagcacatccagtttgttttgtcagtgaccaaccagcaa
ggcagcacgaccactggaatctgcttcaatgtaacgattctgccggtggataacctgcca
ccagaggtgcatgtgaagccgctgacggtggatgagggtggagagagctgtgtgagtgaa
gaccacatgcgtctatcagacaaggactctctacaggactctctgcatgtggagctgaag
accggacctcagcatggcagtatttacctggacggcacacctatgagtccaggccagact
ttcacagtcagggaactgaaaagcctaaaagttagatatcgccatgacagctctgagaca
gaacatgatgatattaaatttattgtcacggatggtataaatattgctgactttgtacta
catgtcaaggtgacgctagtcaatgatgaggtgccagtcctagtgccaggactgaagccc
atattagtctgtgcagagggacaggaagtgcagatcaccatagagtacatctgtgccacg
gatcctgacagtgatgacagcacactgatatatatgattgctcgacagccatatcatggg
gtagttcaaagaaacggcatcattgtggaccgcttcattcaggcagatgtaacagctggc
cttatttcctatagacacacaggacaagagattgggttacagccacgtcatgatgtcatt
acatttgtgatctctgatggagaatcagggctatttccttcctgttgcggtgacagagtc
actatattcaacgcacaaacacctgaagtacagaacgccctgcctgtctatgaccttaat
atcactgtttatcctgtgaacaaccaaccaccatctattgctgttggagaggtgtttatg
gtggatgagggtgggtcagcctccatcacagtcactcatctgagagttgaagaccaagac
tctgctccagaggaccttaacttcattttggttgctcctccacaatttggatacatagaa
aatgtccttcccagtccaggatttgaaaagagcaacatgggaatcagtattgcctctttt
acctacagggatgtgttgaatgggcacattaactatgtccagtctagacaccagaggatg
gagcccaccaccgaccagctcatgttgcatgtgtttgacgggaaacagcagtcctcttca
gtcccgttttacatcatcatccgtccaaccaatgatgagattccagacttcctggccaga
aacatcacggttcgggaaggagacatgaaagagttggacccatctataatcagtgcagtg
gatctggatgttcccagagaccgtttaatgttcagcatagtccagcggcctcagcacggc
tccatcatgagtgtgccacacggcaatgatctgacacattacaagcgtggatctgagatt
cctgtggagcacttcaccatggacaacctgaggaacggcatgtctctgatgtacatgcac
gatggctctgagagtgagcaggatggatttattgttcagctgtctgatggaaaacaccag
ctccagaaacatgtgcgagtcaaagtgctgcctgtcaatgatgaggagccacagattgta
aggaacactgggcttgagatggaggctggggagtccaggctgatctccagtgctgtgctc
agcgctcacgacaaagacactccttcctccgacatcatctatgtgtttgagagcgtaccg
agtcatggtgtcattcagatgaaggtaggcacagactgggtgtctgtatcagcaggaatg
aactgctctcagcaggttttggatatgaacctgttacgttaccttcacacgggtcatcct
ggagcagctgcagcagacttctttgtcttccacctattggatggcaagaaccgctctcct
gcacagcactttcacatcacagtcaaagagctggagaaaggagacatagcgttgtgcctg
aagcctgtgaggacgagtcgtggagagcgtgtgattctcaccacggatgtcttgctggct
gtagacggcactgacaagccggaggagttgctgtacgtgatcactgcacctccagcacat
ggatatgtggagtacatcaaacacaccggagtgcaaatccagtcgttcagtcagctggac
gtagcagcaaacctggtgtgttacgtacatgacaacagagccacttcacctaaagagacc
ctgcagtttatagtcagcaatggcatatcaactcgcaacgggaccctggagatcttcgtg
gagatgactgataaggttctgcccacactagtgcgtaacaccggtctatgggttcctcag
ggctccaccatgactttgacatctgatgtcttattcctgtctgatcctgacagcccacac
actgccttgagctacagggtgctgcagccaccccagtatggccagctgctgttgaagggg
caatcgctggtcactggtagaaatttcacacagcagaatattcaggatctggacgttgca
tacagacactctggaggagcttctcagattgatcgcttcaaattcacagcctccgacagc
acaaagagaggcttcctgctggatggaaaagtgcaaacagagcctgtctttttcacactg
caaatcgaagctctagacagtgccgctccgcagatggcagtgctggaaacgctgtggaaa
gtggagatcctcaaagatggtcgttatgggatcttcatttcctccagggagcttaaggct
caggatctgaactcagcagatgttgatctgatatatcacatcctcagagcgccttatttt
gggtacttggaaaattacaccactggtgagtttgtgaggcagcgtttctctcagagggac
ctgaacagaaggaatattgtctacatcataaactgtgctcaggacactttaactgacagt
ctggagtttgctgtttctgatgcgctgggaaacaccggagcctctcacaaattggagttc
agctgggccagtgtgcagctgaccagaactgagtatgtaatatgcgagagtcaagggtca
gtcgcactgacaatccagcggaagggaaatgtgcaggactcgtcttatgtgactgtacag
gtgaaagaactaacagcatctgctggaaaagactttataccggcttcatcgttgattcag
tttgacccagggatggtcagtcgagtatggaaggtggagattgttcaggactctttagag
gaagctgatgagaaatttgaggttagcttggtgtccccagtggccgcagtgctgaaagac
aactcaaaagccaccatcttcataaaggacacaaatgggcagtgcagaaagaaccggttt
gaagcagacactggccttcgaggtgaagaggtgcagccggggccgtaccctcaacacggc
tccattcaggtggagatgttacctttctctcagggccacatcagaggagacggtgatata
acagttcaagctcccactgctacaaagaaaagactcagagtcactgggaataggaaagtg
gttcagccttctgaaactattcgtcaaggatctgatgtcatttacaaatatcatggtata
atgtcgatggcggtcgaggaggacagcgcagactcaaggtctgacagaaaggcacaggtg
caggtgaccagctgggggcagcagcgctctcctcatgaaaggacaaaaccccagcaaacc
gtcccgcacacaaacaccagacttctgcagcatcttgtgactcagccatcctccaaaccc
tgcactccagagctcactggcttcctgcattacaatgagagcacagctcagctgtttcgc
tgtaacggggacacctggagaccctggacaccaactaatgagactgtaaaagcacagaaa
tgtcctcaagcatggacgtaccacaacaactactgttacatactgagcacagagcgcaaa
gccacgtggagcgccgcggcgcgggcctgcagagagagctacaatggaaacctggtcagt
gttttgtcaaaaggagacatggactggctgtgggacttcagtgaaagaaaacccttttgg
attggtctgaatgatcgtgacaataaaagccgctgggagtgggtgggtggagagcctgtc
acttacaccaactggaggcggagccctcctaaaaacaggaagggaacaaggaggtgcgtc
ctggtctggagaaagacgaaatggcagatacgagattgtaagaatggaaagggacaccgc
tatgtgtgtcatgttaaaatgtga
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