Labeo rohita (rohu): 127171846
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Entry
127171846 CDS
T09007
Symbol
ddx4
Name
(RefSeq) probable ATP-dependent RNA helicase DDX4 isoform X1
KO
K13982
probable ATP-dependent RNA helicase DDX4 [EC:
5.6.2.7
]
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lroh03036
]
127171846 (ddx4)
Enzymes [BR:
lroh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127171846 (ddx4)
Chromosome and associated proteins [BR:
lroh03036
]
Eukaryotic type
Gene silencing
piRNA pathway
127171846 (ddx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
127171846
NCBI-ProteinID:
XP_050976740
LinkDB
All DBs
Position
10:23827317..23841492
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AA seq
723 aa
AA seq
DB search
MDDWEEDQGPVVSCSSSFGLGSSGADGGFKSFYTGSTGNGKANNEDEGSSWKTTAGDGFR
GRGGRGGSRGGRGGFRNTFKSEIDENGNDEGWKDGEGQGRSRGGFRGGFRGGFRGGFRDG
SDENGTNEGWKDGEGQRRGRGGFRGGFRGGFRDGGNEDTGRKSFGRENDENNADEGWKGG
ESRGRGRGGFRGGFRDGGGDEETGKSGFGRGGFRGRNEEVFSKVSTGGKVDQEAGESAGP
KVVYVPPPPPEEESSIFSHYATGINFDKYDDILVDVSGSNPPKAIMTFDEAGLCESLRKN
VVKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQRFMADGVAASKFSE
VQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGINTGYTIREVLKGCNILCGT
PGRLLDIIGRGKVGLSKLRYLVLDEADRMLDMGFEPDMRKLVGSPGMPSKEDRQTLMFSA
TYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQVDQYSKRDQLLELLRSTGNER
TMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSDFRTGQCPVLVATSVAAR
GLDIEHVQHVVNFDLPSSIDEYVHRIGRTGRCGNIGRAVSFFNPESDTPLARSLVKVLSG
AKQEVPKWLEEIAFSAHGTTGFNPRGKVFASTDTRKGGSFKTDEPPQASAPSPAAAADDE
EWE
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggatgactgggaggaagatcagggccctgttgtgtcctgcagttcaagttttggtctt
ggctctagtggtgcagatggagggttcaagagcttctatacaggaagtacaggaaacggg
aaggcaaacaatgaagatgaaggcagctcatggaagacaactgctggtgatggattcagg
ggcagaggaggcaggggaggatcacgaggaggaagaggtggcttcagaaatacctttaaa
tcagaaattgatgaaaatggcaacgatgaggggtggaaagatggtgaaggccaaggaaga
agtcgtggtggtttccgtggtggatttcgcggtggttttcgtggtggtttccgtgatgga
agtgatgaaaatggcaccaatgagggttggaaagatggtgaaggccaaagaagaggtcgc
ggtggttttcgcggtggtttccgtggtggttttcgtgatggtggtaatgaagatactggg
agaaaaagcttcggaagagaaaacgatgaaaataacgcagatgagggttggaaaggaggt
gaaagcagaggaagaggtcgtggaggtttccgcggaggtttccgtgatggtggtggggat
gaagagacaggaaaaagtggctttggaagaggaggtttcagaggccggaatgaggaagtg
ttttccaaggtctcaacaggaggcaaggtagatcaagaagcaggagaaagtgcaggaccc
aaggttgtctatgtgccgcctccccctccagaagaggagagttccatattttcccattat
gccacaggcattaattttgataaatatgatgacatccttgtggatgtgagtggcagcaat
cctccaaaggctattatgacttttgatgaagcaggactttgtgagtcactaagaaagaat
gtggtgaagtctggatatgtgaagcctacacctgtccagaaacatggaatccccattatt
tctgctggacgagatctaatggcttgtgcccagaccggatcaggaaaaacggcggccttc
ctgctgcccatcctgcagcggtttatggctgatggagtggcagccagcaaattcagcgag
gtgcaggaacccgaggccataatcgtggcacccaccagagagctcatcaatcagatctat
ctggaggccaggaagtttgcatatgggacctgtgtgcgtcctgtggtggtttatggaggt
ataaatactggatacactattcgagaggtgttaaagggctgcaatattttgtgtgggacc
ccaggaagattgcttgacatcattggtcgtggaaaggttggcctgagtaagctgcggtat
ctggttctggatgaagcagacagaatgctagacatgggttttgagccagacatgcgcaag
ctggtgggatctccaggaatgccttcaaaagaggatcggcaaaccctcatgttcagtgcc
acctaccctgaagatattcaaaggatggcagcggactttctgaaagtggactacattttc
ctggctgttggtgtggttggtggagcgtgcagtgacgtggagcaaactatcgttcaggtg
gaccagtactcaaagagagatcagctgcttgaattgctcaggtctacagggaatgaacgc
acaatggtctttgttgaaaccaaaagaagtgctgatttcatagcaacatttctctgtcag
gagaagatctctactacaagcatccatggtgatcgggagcagcgagagcgagagaaggct
ctcagtgattttcgcacaggccaatgtcccgtcctggtggccacgtctgtggctgccaga
ggcctggatattgagcatgtccagcatgttgtaaatttcgacctgcccagcagcatcgac
gaatacgtccatcggattggaagaactggacgctgcgggaacatcggtcgggccgtgtcc
ttttttaacccagagtctgacactccattagctcgctctctggtcaaagttctgtcaggg
gccaaacaggaggttcccaaatggctggaggaaattgctttcagtgctcatgggacaaca
ggcttcaaccctcggggaaaagtgtttgcatctacagacactcggaagggaggatccttc
aagacagatgagccaccacaagcgtccgccccaagcccggcagctgctgcagatgacgag
gaatgggaataa
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