Labeo rohita (rohu): 127173174
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Entry
127173174 CDS
T09007
Name
(RefSeq) nidogen-1
KO
K06826
nidogen (entactin)
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
127173174
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
lroh04990
]
127173174
Domain-containing proteins not elsewhere classified [BR:
lroh04990
]
EGF-like domain-containing proteins
cEGF domain-containing proteins
127173174
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
G2F
NIDO
EGF_3
Ldl_recept_b
cEGF
Thyroglobulin_1
EGF_CA
FXa_inhibition
EGF
SGL
hEGF
EGF_MSP1_1
Plasmod_Pvs28
NMU
Motif
Other DBs
NCBI-GeneID:
127173174
NCBI-ProteinID:
XP_050978826
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All DBs
Position
11:complement(13321255..13365017)
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AA seq
1243 aa
AA seq
DB search
MVLLRSVGLLALLVSVQCLNREQLFDYGIEFGDKILESGTDSVKELELEQTLLFFKGKFD
KIYVNTNGFISVTEPTDESEYLGKMPASFGMIAAFLGDLDTTDGAGHVYFRQDKSPEVLR
RAAEHISQAFPSDDGIEPTHAIIVTWENVLPQGEHGRGDGYEFSRNTFQLVVANLETASY
AILLYPEEKMQFGSTLIDDQDQPVEVGFNEGKVAGWFGWATTQGSYYRITQDEESVSALA
QETNSGRPGIWVYQIGKLFFTSIIPGEVTQVTESTEGTKVTEGTEVMKVTEVTDFTTEET
MVDTPAPEPSIPWIGHHKELQTFEPPYETLTTSPEPFAESSTPDEPQYHYVQPRRPQTPL
QQQPQIPQVVIIDEDELNVDVFSYNYETCSSNKHKCSVFADCRDYANGYCCHCKPGYYGN
GKDCVAEGKPQRMNGKVNGRIYVGDAPSPVEFSNNDLHSYVVTNDGRAYIAISSIPSSVG
PSLQPLPALGEAIGWAFALEQPDYQNGFSIVGGLFTRQAEVVFQPGNERLTIRQEFRGID
EHDHLLISTELDGRIPELPQGATVQIEPYNEIYQYSSNLITSSSRRDYTVNMPDGSVRTY
SYLWTQNIKFQSCSHEEVMSAVPASQQLSVDQIFVMYDASNQLIRFAMSNKIGSIHSGIP
EQNPCFTGRHGCDTNAACRPAQGKEFTCECAAGFTGDGRVCYDVDECSESPQICGPYSIC
NNQPGSFRCECLDGFRFASDGRTCVETERPVDHCQRGTHDCDAPERARCSYTGDSSYVCS
CLPGFSGDGRACQDIDECQPGRCHSDAICYNTQGSFTCQCRPGFHGDGFSCTPGSDREQT
ACERHRESALGSSGGYFSFRPRPAVGQHVPTCDAYGAYEPTQCHASVGQCWCVDSSGQEI
PGSRAEPGSRPMCIDHNVAPPLTGPTPRTDISPLTPGANLLFAQNGKIDHIPLDGNRMNK
DESKTVLHVPGKVVIAVAFDCVEQMIYWSDITQPAISRAKLQGGETSILISKDLGSPEGI
AVDHMSRNMYWTDSILDRIEVSRLDGSQRRVLFDNDLINPRPIVADPANGYLYWADWNRD
GPKIERSSMDGSDRTALVQDGLGLPNALTFDPQSRQLCWADAGTRKVECVDPFSRLRRKL
TEGIQYPFAIVSYGRNLYYTDWRREAVVALDRNDGMEVEEFLPQRRSRTYGITMTYPQCP
AGVNYCSRDNGGCSHLCLPRPGGFTCRCPSATDGSCVEQDENF
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atggttcttctgcgcagtgttgggcttctggctctgctggtgtcggtccagtgtctgaac
cgggagcagctcttcgattatgggatcgagtttggcgacaagattctggaatctggaacc
gattcggttaaagaactcgagctggagcaaacgctgctcttcttcaaaggaaagttcgac
aaaatttacgtcaacactaatggcttcatctcagtgactgaaccgaccgatgagtctgag
tacctggggaagatgccggccagttttggtatgattgcagccttcctgggagatctggac
accaccgatggggccggtcacgtctatttccgccaggataaaagtcctgaggtgctccgg
agagccgcagagcacattagccaagcgtttccttcagacgacgggatcgaacccacgcac
gccatcatcgtcacctgggagaacgtcttgcctcaaggtgaacacggacgaggagatgga
tatgaattttcgagaaacacttttcagctagttgtagcaaacctggagacggcgtcttac
gccatcctgctgtatccagaagagaaaatgcagttcggttccacgctcattgatgatcaa
gatcagccggttgaagtcggcttcaatgaagggaaggtcgcgggctggttcgggtgggcg
accactcaaggatcttattatcgcatcactcaagacgaggagtccgttagcgctctcgca
caggagacaaactcgggccgtcctggcatttgggtctaccagattggcaaattgtttttc
acctccatcatacctggagaggtcacacaggtcacagagagcacggagggcacgaaggtc
acagagggcaccgaggtaatgaaggtcacagaggtcacagactttacaactgaggagact
atggtggacactccggcccctgagccatcgatcccgtggattggacaccacaaggagctt
cagaccttcgaacctccgtatgaaacgctcaccaccagtcctgagccgttcgcagagtcg
tccacccctgacgagcctcagtatcattacgttcagccgcggcgaccgcaaacgccgctt
caacaacaaccgcagatcccgcaggtggtgatcatcgatgaggacgagctgaacgtcgac
gtgttttcttataattacgagacgtgctccagcaacaagcacaagtgctccgtgtttgcc
gactgcagagattacgctaacggatactgctgtcactgcaaacccggatactacggcaat
ggcaaggattgtgtcgccgaaggcaagcctcagaggatgaacgggaaggtcaacggcagg
atctacgtgggcgatgctccgtcacccgtggagttttccaacaatgacctgcactcgtat
gtggtgactaacgacggtcgggcgtatatcgccatcagcagcatcccgtccagcgtcggc
ccgtctctgcagcccctgccggctctgggcgaggccatcggatgggcgttcgctctggag
cagcccgactaccagaacggcttcagcatcgtcggagggcttttcacccggcaggccgag
gtcgtattccagcctggtaacgagcggttgaccatcaggcaggaattcagaggcatcgat
gaacacgatcacctgctgatcagcaccgaactggacggcaggatcccagagttgccacaa
ggagccacggtccagattgagccctacaacgagatttaccagtactcaagcaacttaatt
acgtcctcctcgcggcgggactacaccgttaacatgcccgacggtagcgttcgcacgtac
agctacttgtggacgcagaacatcaagttccagagctgctcgcacgaggaggtcatgagc
gctgtgccggcgagccaacagctcagcgtcgaccagatcttcgtcatgtacgacgccagc
aaccagctgatccgcttcgccatgagcaacaagatcggctccatccacagtggaatcccg
gagcagaatccctgtttcacaggaagacacggctgcgacaccaacgccgcctgccgtccc
gctcaaggaaaggagttcacctgcgaatgcgccgctggatttaccggagacggacgcgtt
tgttacgatgtggacgagtgctcagaaagccctcagatctgcggtccgtacagcatctgc
aacaaccagccgggatctttccgctgcgaatgtctggacggttttcggttcgccagcgat
ggacggacgtgcgtcgagacggagcgtcccgtggatcactgtcagagaggaacgcacgac
tgcgacgctcccgaacgcgccagatgcagctacacgggagactcgtcctacgtctgctcc
tgtctgccgggcttctctggagacggacgggcgtgtcaggatatcgatgagtgccagccg
ggccgttgccatagcgatgccatctgctacaacacccagggctccttcacctgtcagtgc
cggcctggtttccacggcgatggcttcagctgcacacctggttccgatcgtgagcagacg
gcgtgtgagcgtcaccgagaatcagctctggggtcgtccggcgggtacttctccttccgt
ccacgtccggccgtcggtcagcacgtgcccacctgtgacgcctacggcgcttacgaaccc
acgcagtgtcacgccagcgtcggtcagtgctggtgcgtcgactcgtccggacaggagatt
cccggatccagagccgaaccgggcagcagacccatgtgcattgatcataacgtggctccg
cccctcactggccccacccccagaactgacatcagccctctgactcctggagcaaacctc
ctattcgcccaaaacggcaagatcgatcacatcccgctggacggcaaccgaatgaacaaa
gacgagtcgaagacggttctgcacgtacccggtaaagtggtgatcgcggtggcgttcgac
tgcgtggagcagatgatctactggtctgatatcacacaacccgccatcagcagagcaaag
ctacagggcggagaaaccagcatcctcatcagcaaagatctgggcagtcctgaaggaatc
gccgtcgatcacatgtccagaaacatgtactggaccgactccatactggaccgcatcgag
gtgtccagattggacggaagtcagcgtcgcgtcctctttgacaacgacctcatcaaccca
cgaccgatcgtcgctgatcccgccaacggatatctgtactgggccgactggaaccgagac
gggcccaagatcgagcgctccagcatggacggaagcgacaggacggcactggtgcaggac
ggactggggctgcccaacgctttgacctttgacccccagagcaggcagctctgctgggcg
gacgcaggaactcgtaaggtggagtgcgtcgatccgttctctcgtctcaggaggaaactg
accgaaggcattcagtatccgttcgccatcgtgtcttacggcagaaacctctactacacc
gactggagaagggaagcagtggttgctttggaccgcaatgatgggatggaggtggaagag
tttcttcctcagagacgttcacgtacatacggcatcactatgacttacccacaatgccct
gcaggcgtgaactactgctctcgtgataacggaggctgctcgcatctatgtctgccgcgg
ccgggcggattcacctgccgctgtcccagcgccacagacgggtcgtgtgtcgagcaggac
gagaatttctga
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