Labeo rohita (rohu): 127175766
Help
Entry
127175766 CDS
T09007
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03013
Nucleocytoplasmic transport
lroh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127175766 (upf1)
03015 mRNA surveillance pathway
127175766 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lroh03019
]
127175766 (upf1)
Enzymes [BR:
lroh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
127175766 (upf1)
5.6.2.5 RNA 5'-3' helicase
127175766 (upf1)
Messenger RNA biogenesis [BR:
lroh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
127175766 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
127175766 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
YusW
Motif
Other DBs
NCBI-GeneID:
127175766
NCBI-ProteinID:
XP_050982974
LinkDB
All DBs
Position
2:37490515..37514571
Genome browser
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGVLPNGEDAVVKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDMAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMSTAMYDAREAMIPGSVYDRSSTGRPSNMYFQTHDQVGMIGTGPNPMGSMN
IPIPFNLVMPPMPPPGYLGQVNGPAAGRGAPKGKTGGRGGRQRNRGTGNHGSGQANMPNS
QASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcgcagacgctcaccttcctggacacggaggaa
gcggagctgctcggggccgacacgcagggctccgagttcgagttcaccgactttacgctg
cccagccagacccaaacgcagggccagacccagagtcaactcgacaaccaggtgaacggg
cctgatggcgttctgcccaacggagaggatgcggtggtgaagaccagccaacttcttgcc
gagctgaactttgaggaagatgaggaagatacctactacactaaagacctgccggtgcac
gcctgcagctactgtggcatccatgatccagcatgtgtggtctactgcaacaccagcaag
aaatggttctgcaacggccgcggtaacacctctggcagccatattgtgaaccacttggtg
agggccaaatgtaaggaggtgacgctgcataaggatggaccgctgggagagacggttctg
gagtgctataactgcggctgccgtaatgtcttcctgctcggcttcatcccggccaaagca
gactctgttgtggtgcttctgtgcaggcagccatgtgccagtcagagcagtctgaaggac
attaattgggacagctctcagtggcagcccctcatccaggaccgctgcttcctgtcctgg
ctggtgaagatcccgtccgagcaggagcagctgagggcccgtcagatcacggcacagcag
atcaataaacttgaggagctctggaaggaaaacccaacagcgacgctggaggatctggag
aaaccaggagtggatgaggaacctcagcacgttctgctacgctatgaagacgcctatcag
taccagaacatctttgggccgctggttaaactagaggctgactatgacaagaaactcaaa
gagtcccaaactcaagacaatataacagtgaggtgggatttgggactgaataaaaagcgg
atagcttatttcactctgcccaagacggattcaggtgacatgcgactgatgcaaggagac
gagatctgtctgcgctataaaggagacatggctccgctctggaaagggatcggacacgtc
atcaaagtcccggacaattatggagatgaaattgccatcgagttgcgcagcagtgctgga
gcacctgtggaagtgccgcataacttccaggtggactttgtctggaagtcgacatctttt
gaccgcatgcagagcgccctgaagacgtttgctgtggatgagacctctgtgtctggctac
atctaccacaagctgctgggtcatgaggtggaggacgttatcatcaaatgccagctgccc
aaacgcttcaccgcgcagggcctgccggatctcaaccactcgcaggtttatgccgtgaag
acggtgctgcagcgacccctcagtctgatccaggggcctccaggaaccggaaagactgtc
acctctgccaccatcgtctaccatctggccagacagggcaatggtccagtgctggtttgt
gctccaagtaacatcgcagtggaccagctaacagaaaagatccatcagacggggctgaag
gtggttcgtctgtgtgctaagagtcgtgaggccatcgattcacctgtgtctttcctggct
ctgcacaatcagatccgtaacatggacagcatgccagagttgcagaaactgcagcagctg
aaggacgaaactggcgagttgtcgtcttctgatgagaaacgttatcgagctctcaaacga
accgctgagagagagctgctcatgaatgcagacgtgatctgctgcacgtgtgtgggtgcg
ggtgaccctcgcctggctaagatgcagttccgctccatcctcattgatgagagcacacag
gccacggagcccgagtgcatggtgccagtggtgctcggggccaaacagctcattctggtg
ggtgaccactgtcagctgggtcctgtggtcatgtgcaagaaggcggctaaagcgggtctg
tctcagtctctgtttgagaggctggtggtgctgggcatcagacccatccgtctgcaggtg
cagtaccgcatgcacccggctctcagcgctttcccgtcgaacatcttctacgagggctct
ctgcagaacggagtcaccgccgctgatcgcatcaagaaaggctttgacttccagtggcct
cagcctgataagcccatgtttttctacgtgacccagggccaggaggagatcgcaagctct
ggcacctcctatctcaacaggactgaggctgctaatgtggagaagatcaccacccgtctg
ctgaaggccggagccaaacctgaccagattggtatcattacaccatacgagggtcagcgc
tcttacctggtgcagtacatgcagttcagcggctcgctgcacaccaaactataccaggag
gtggagatcgccagcgtggatgcgttccagggcagagagaaggacttcatcatcctgtct
tgtgtcagagctaacgagcaccagggcatcggcttcctgaacgacccgcgccgtctcaat
gtggcgctgaccagagccagatatggtgtgatcattgtgggcaatccgaaggctctgtcc
aagcagcctctgtggaaccaccttctgaactactacaaggagcagaaggttctggtggag
ggaccgctgaacaacctgagggagagcctcatgcagttcagcaagccacgcaagctggtc
aacaccatcaaccctggagcccgtttcatgagtaccgccatgtatgatgcaagagaggcc
atgattcctggatctgtgtatgatcgcagcagcaccggtcgtccgtctaatatgtacttc
cagacccatgaccaggtcggcatgatcgggactgggccgaacccaatgggctccatgaac
atccccatcccgttcaatctagtcatgccgcccatgcctccgcccgggtacctgggccag
gtgaacggaccagctgcaggtcgtggtgctcctaaaggtaagaccgggggtcgtggaggt
cgtcagagaaaccgtggcaccggtaaccacggcagcgggcaggccaacatgccgaacagc
caggccagtcaggatctggtgtctcagcccttctcgcagggtccactgacccagggctac
atcaccatgagccagccgtcacagatgagccaacctggactgtcccagcccgagctctca
caggacagctacctgggtgatgagttcaaatcccagatggatgtggcgctttcccaggat
tcaacctaccagggcgaacgggcatatcaacacggaggagtgactggactctcacagtac
tag
DBGET
integrated database retrieval system
