Labeo rohita (rohu): 127177098
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Entry
127177098 CDS
T09007
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03030
DNA replication
lroh03410
Base excision repair
lroh03420
Nucleotide excision repair
lroh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
127177098 (lig1)
03410 Base excision repair
127177098 (lig1)
03420 Nucleotide excision repair
127177098 (lig1)
03430 Mismatch repair
127177098 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lroh03032
]
127177098 (lig1)
03400 DNA repair and recombination proteins [BR:
lroh03400
]
127177098 (lig1)
Enzymes [BR:
lroh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
127177098 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
127177098 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
127177098 (lig1)
DNA replication proteins [BR:
lroh03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
127177098 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
127177098 (lig1)
DNA repair and recombination proteins [BR:
lroh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
127177098 (lig1)
NER (nucleotide excision repair)
Other NER factors
127177098 (lig1)
MMR (mismatch excision repair)
Other MMR factors
127177098 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
127177098
NCBI-ProteinID:
XP_050985090
LinkDB
All DBs
Position
2:complement(31364529..31382360)
Genome browser
AA seq
987 aa
AA seq
DB search
MQRSIASFFQPMKSKEKSDGQVKAKTEPVKSPLKIQNGVQDCDSPVKKVHKRSRAIIDSD
DEDQPMVKEQVPKQSEVQTVKPEKNSDVAKAASTPVSPKTPITPTTPVTSSASVAVVTPA
SSGTPGTPATPTSTSPSGIPKRKTARKQFPKRKLDSRSDGEGTKEEEKEVDEGQESKRAR
VETSPGKTDNEMMEVEEKSVDEKTAVEEQKEEDEAKTTAVEDNANSEMKEKDKNEVKQEK
KVNGESGKKEKKEDKKEKKDSSPKQVVKKEKNTEEEGGSAKKKPISSFFAPRKAAVKLEK
EERNEGEKKKDGEVSDAAEQKEKKSEKTVDSAVQSQFDPSRAHYHPIDHACWTKGQKVPY
LAVARTFEKIEEDSGRLKNIETLSNFLRSVILLSPDDLLCCVYLCLNQLGPAYQGLELGV
GETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAESSRSNQRMMFAPANLTAGGVFNKLK
EIANMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLMALSQAVCL
SPPGQEFPPAVLDAGKGMSTENRRAWLEEKALILKQTYCEMPNYDAIIPVLLKEGIDELP
KHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEASFTCEYKYDGERAQIHILENGEVRIFSR
NQEDNTSKYPDIISRIPQVKKENVRSCVLDSEAVAWDREKKQIQPFQVLTTRKRKDVDAS
EIKVQVCVYAFDLLYLNGESLVREPLSKRRALLRESFEEKEGEFVFARSLDSDNTDVIAE
FLEQSVRDSCEGLMVKTLEKHATYEIAKRSHNWLKLKKDYLEGVGDTVDLCVIGAYLGKG
KRAGSYGGFLLACYDEENEEFQSVCKIGTGFKDEDLEQHYNFLKEHILPKPRPYYRVDQS
AEPDVWLEAVQVWEVKCADLSLSPIYKAAMGLVDPEKGISLRFPRYLRIRDDKKPEDATT
GSQIADLYKKQQQIQNQGEKQDLEDYY
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagcatagcgtctttctttcagccaatgaaaagtaaggagaagagtgatgga
caggtcaaagcaaagacagaacctgtaaaaagtcccctcaaaattcagaatggcgtgcag
gactgtgattcgccagtaaagaaggtgcataaacgcagtcgagcaatcatagacagtgat
gatgaagatcagccaatggtaaaagagcaggtgccaaaacagagtgaagttcaaacagta
aaaccagagaagaattctgatgttgcaaaggctgcttccactccggtatctccaaaaact
cccataaccccaacgactccggtcacgtcgagtgcctctgttgcggtggtaaccccagct
tcctcaggcactccgggaactccagcaactccgacatcaacatcgccgtcaggcattccc
aaacgcaagactgcccgtaagcagttccccaagaggaaactggacagcagaagtgatgga
gaagggacgaaagaggaggagaaggaggtcgatgaaggacaggagagtaagagagcacga
gttgagacctcacctggaaaaacagacaacgagatgatggaggtggaagagaagagcgtg
gatgagaagactgcagtcgaggaacagaaggaggaggatgaagcaaaaacaaccgcagtt
gaggacaatgcaaacagtgagatgaaagaaaaggataaaaatgaggttaaacaagagaaa
aaggtaaatggagaaagtgggaagaaagagaaaaaagaagacaagaaagagaagaaagat
agcagtcctaaacaagtggttaagaaagaaaaaaacacagaagaggaaggtggttcggcc
aaaaagaaacccatcagcagcttttttgctcccagaaaggcagctgtaaaactggagaaa
gaggagcgaaatgagggagaaaaaaagaaggatggagaggtctctgatgctgctgaacag
aaagagaagaaaagtgaaaaaacagtggattctgcagtccagagccagtttgatccctcc
agagcgcattaccatcccattgaccacgcctgctggacgaagggccaaaaagtgccatat
ttggctgttgcacgcacctttgagaagattgaagaggattcaggcaggttgaaaaacatt
gaaacactttccaactttctgcgatcagtaattctgctctctccagatgatttgctatgc
tgtgtgtacctgtgtcttaatcagctcggccctgcatatcagggtctggagctgggcgtt
ggggagaccgtcctgatgaaagccgtcgctcaagcaaccgggcgacaactggacaaaatc
aaggcggaggctcaggagaaaggtgacctgggattggttgctgaaagttcccgcagcaac
cagagaatgatgtttgcaccagccaatctgacagcagggggcgttttcaacaaactgaaa
gagattgctaacatgagtggaaactctgcaatgaataagaagattgacattattaaaggc
ttgtttgtggcgtgtcggttttctgaggctcgatatattgtgcggtcactggctgggaag
ctgcgtatcggattggctgagcagagcgttctcatggctctcagtcaggctgtgtgtctg
tcgcccccgggccaagaattcccaccggctgtgctggatgcagggaaaggaatgagtaca
gaaaacaggagagcatggctggaggagaaagcgctgatcctgaaacagacatactgtgag
atgccaaattatgatgcaatcattcctgtattgctgaaggagggcatagatgaactgccc
aagcattgcaagctcaccccaggcgtgcccctgcggcccatgttggctcacccaactaaa
ggggtcggtgaggtaatgaaacgttttgatgaggcatctttcacctgcgagtataaatat
gatggagagagagcccagatccatattcttgagaatggagaggtgcgcattttcagccga
aaccaagaggacaacacaagcaaataccctgatattatctcacggatcccacaggtgaag
aaagaaaacgtacggtcctgtgttctggattcagaggcggtggcctgggacagagaaaag
aaacagatccagccgtttcaggtcctcaccacgaggaaaaggaaggatgtggatgcatct
gagatcaaggttcaggtgtgtgtgtacgcctttgatctgctgtacctcaacggagagtct
ctggtgcgagagcctctaagcaaacgtagggctctgttgcgggagagttttgaagagaaa
gaaggggagtttgtttttgctagatctctggattctgacaacacagatgttatcgctgag
ttcctggagcagtctgtacgagattcctgtgagggcctaatggtgaagaccttggaaaaa
catgcaacttatgagattgccaaacgatcccacaactggctcaagctgaagaaggactat
ctggagggtgttggagacacagtggatctgtgcgtgattggtgcttatctgggaaagggg
aagagagcaggcagctatggaggatttttactggcctgctacgatgaggagaacgaggag
ttccagtctgtctgcaagattggaacaggcttcaaagatgaagatctggagcaacattac
aatttcttaaaggagcacatcttacctaaaccacgcccatattaccgagtggaccaatca
gcagagccagatgtctggctggaggcggtgcaagtgtgggaggtgaaatgcgctgacctt
tcactgtctccgatctacaaggcagcgatgggattggtggacccagagaaaggcatttca
cttcgtttcccacggtaccttaggattagagatgacaagaaaccagaggatgccaccaca
ggttcacagattgcagatctctacaagaaacagcagcagattcaaaatcagggtgaaaag
caagatctggaggactattattga
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