Labeo rohita (rohu): 127181803
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Entry
127181803 CDS
T09007
Symbol
gtf2h4
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh03022
Basal transcription factors
lroh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
127181803 (gtf2h4)
09124 Replication and repair
03420 Nucleotide excision repair
127181803 (gtf2h4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lroh03021
]
127181803 (gtf2h4)
03400 DNA repair and recombination proteins [BR:
lroh03400
]
127181803 (gtf2h4)
Transcription machinery [BR:
lroh03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
127181803 (gtf2h4)
DNA repair and recombination proteins [BR:
lroh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
127181803 (gtf2h4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
127181803
NCBI-ProteinID:
XP_050992702
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All DBs
Position
19:complement(8221868..8238518)
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AA seq
466 aa
AA seq
DB search
MKLRVQLQCKNLHEYLKELSPEILDRLYNHPATCLAVYRELPSLAKNYVMRMLFLDHPLP
QAAVALWVKKDSQKDHDQCVSVLTGLRLWHSQHLQGGLQGFVLNPVFKDNLRIALLGGGK
PWADEGSNLGPDRHARDVESLDRYAMERWEVILHFMVGSPSAAVSQDLAQLLIQAGLMKS
EAGEAPCITSAGFQFLLLDTASQLWYFTLQYLKTAQSRGMDLVEILSFLFQLSFSTLGRD
YSVEGMSESLLTFLQHLREFGLVFQRKRKSRRYYPTRLAITLAAGVTVNPSSGSASSALG
ATPGTGDTGFIVVETNYRVYAYTNSELQIALVALFSEMLYRFPNLVVAQVTRESVQQAIT
NGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELEKDRLQFTEGVLYNQFLSQA
DFEVLRDRAQGLGVLVWQNPAHRVMVVTPHGHSEVKRFWKRQKSHT
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgaagcttcgagttcagctgcagtgcaagaacttgcacgagtatctgaaggaattgagt
cccgagatcctcgacaggctctacaatcatccagcaacatgcctggcagtctacagggaa
cttccatcactggcgaagaattatgtgatgcgaatgctgtttttagaccatccactccca
caagctgcagtcgcactgtgggtaaaaaaagacagtcaaaaagaccacgatcagtgtgtg
tcggtgttaactgggctacggctctggcacagtcagcaccttcaaggtggactccaaggc
tttgtgctcaaccctgtgtttaaagacaacctgagaatagcacttttaggcggcggtaaa
ccgtgggcagatgagggcagtaacctgggtcctgatcggcacgcgagggatgtcgaaagt
ctcgaccgctatgccatggagcgttgggaggtcatccttcacttcatggtgggttctccc
agcgcagccgtcagccaggatctggcccagctcctcatacaggccgggctcatgaagagt
gaggctggtgaggctccttgtattacatcagcagggtttcagttcttgctgctggacaca
gcgtctcagctgtggtacttcactctgcagtacctcaaaacagcacagtctcgaggcatg
gacctggtggagattctttcctttttgttccagctgagtttctccactcttggtagggat
tattctgtggagggcatgagtgagtctctgctcacatttttgcagcacttacgagagttc
ggtctggttttccaaagaaagaggaagtcaaggaggtactaccccaccaggttggccata
actctagctgcaggagtcacagtaaacccttcctctggatctgcctcttctgcactcgga
gccacaccaggaacaggagacacgggcttcatcgttgtagaaaccaactaccgtgtatat
gcgtacacaaactctgaactccagattgcactagtagcgctatttagcgagatgctgtat
cggtttcctaatctggtggttgctcaggtaaccagagagtcggtgcagcaggccatcact
aacggcataacagcacagcagataattcactttttaaggacccgagctcacccagtaatg
cttaaacagacccctgtccttcccccaacaatcacagatcagatcaggctgtgggagctc
gagaaagatcgcttacagtttactgagggagtgttatacaaccagtttttgtcccaggct
gattttgaagtgttgcgggacagggctcagggtttaggtgtgctggtttggcagaacccc
gctcacagggtcatggtggtgacgccacacggacacagcgaggttaagagattctggaag
agacaaaagagccatacatga
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