Labeo rohita (rohu): 127181832
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Entry
127181832 CDS
T09007
Name
(RefSeq) tripartite motif-containing protein 16
KO
K12006
tripartite motif-containing protein 16
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lroh04121
]
127181832
Ubiquitin system [BR:
lroh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
127181832
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
SPRY
zf-C3HC4_4
zf-RING_UBOX
zf-B_box
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
U-box
zf-RING_5
Tropomyosin
CoA_transf_3
DUF4407
zf-RING_6
P4Ha_N
Motif
Other DBs
NCBI-GeneID:
127181832
NCBI-ProteinID:
XP_050992749
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All DBs
Position
19:2208879..2212064
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AA seq
536 aa
AA seq
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MAEASVSEEHFICPLCLDLLNSPVTIPCGHSYCMSCITDCWDREDQKRVYSCPQCRQTFS
PRPTLGKNTMLAEVVETLKKTKLKSAVPAGPGDVECDICTGRKHKAVESCLVCLESYCQT
HFEHHKEFCSGKKHKVTDATGRLQQMICHQHNKPLEVFCRTDQQYICMLCAKDEHKNHAA
ISTEAERTEKEKHLKETLQKRIQQRQKDLEQLREAVESHKRSAQTAVEDSERIFTELIRS
IERSRSEVTQRIRDQEKAAVSRAEGQMEQLEQEIDDLKRRNTELEQLSHTDDHIHFLQSV
QSLSPLPESKDNFIGSFLFSFNDVRESVSQLRQKLEDFCKEEMKKTLVSHSNIASRTRED
FLQYSHQLTLDPNTVHKLLRLSERNRLVTNPDKLQTYPDHPDRFYKCLQVLCRESVCGRC
YWEVEWSGKVGVGISVSYKSISRKGSGDKCLFGCNDQSWSLSCSPSSFSFWHNNKETKLS
VPSSCSRIGVYVDHSAGTLSFYRISDTMNLIHTVQTTFTQPLYPGFLVGFKSSVKL
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atggctgaagccagtgtttcagaggagcacttcatttgtccactgtgtttggatctacta
aatagtccagtgactattccctgtggacacagttactgtatgagctgcattacagactgc
tgggatcgagaggatcaaaagagagtctacagctgccctcagtgcagacagaccttcagt
ccaagacctactttaggtaaaaacaccatgctggctgaagtggtggagacattgaagaag
accaaactaaaatctgctgttcctgctggacctggagatgtggagtgtgacatctgtact
ggaagaaaacacaaagctgtcgagtcctgtctggtgtgtctggagtcttactgtcaaact
cattttgagcatcataaggagttttgctcaggaaagaaacacaaagtgactgatgccact
ggacgactgcagcagatgatctgccatcaacataataagcctctggaggttttctgtcgt
actgaccagcaatacatttgcatgttgtgtgcaaaggatgaacataaaaaccatgcagct
atctcaactgaagcagagaggacagagaaagagaaacacttgaaggagacactgcaaaag
agaatccagcagcgccagaaagatcttgagcagctgagagaggctgtggagtctcataag
cgctctgcacagacagcagtggaggacagtgagaggatctttactgagctcatccgctcc
attgagagaagccgctctgaggtgacacagcggatcagagatcaggaaaaggctgcagtg
agtcgagctgaaggacaaatggagcaactggagcaggagattgatgatctgaagaggaga
aacactgagctggagcagctttcacacacagatgatcacatccatttcctgcagagtgtt
cagtctctctcacctcttcctgaatctaaagacaacttcattggcagtttcctcttttcg
tttaatgatgtgagagaatccgtcagtcaactgagacagaaactggaggatttctgcaaa
gaggagatgaaaaagacattggtctctcacagtaacattgcttccaggacacgagaggac
ttcctacaatattcccatcagctcactctggatccaaacactgtacataaactcctccgt
ctgtctgagaggaacagattggtgactaaccctgacaaactccagacatatcctgatcat
ccagacagattttataaatgtcttcaggtgttgtgtagagagagtgtgtgtggacgctgt
tactgggaggttgagtggagtgggaaagttggtgtgggtatatcagtgtcatataagagc
atcagcagaaagggatctggtgataagtgtttatttggatgcaatgatcagtcctggagt
ttgtcctgctctccctccagtttctcattctggcacaataacaaagagactaaactctct
gttccctccagctgcagtagaataggagtgtatgtggatcacagtgcagggactctgtcc
ttctacagaatctctgacacaatgaacctcatccacacagtccagaccacattcactcag
ccactctatcctgggtttctggttggttttaaatcatcagtgaagctgtga
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