Limosilactobacillus reuteri I5007: LRI_1713
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Entry
LRI_1713 CDS
T02701
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lrt
Limosilactobacillus reuteri I5007
Pathway
lrt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRI_1713
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrt03019
]
LRI_1713
03009 Ribosome biogenesis [BR:
lrt03009
]
LRI_1713
Enzymes [BR:
lrt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LRI_1713
Messenger RNA biogenesis [BR:
lrt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LRI_1713
Ribosome biogenesis [BR:
lrt03009
]
Prokaryotic type
rRNA helicases
LRI_1713
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
LidA_Long_CC
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AGN99922
UniProt:
R9WLE3
LinkDB
All DBs
Position
complement(1761108..1762601)
Genome browser
AA seq
497 aa
AA seq
DB search
MKFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPII
ENVDTENPNIQAIIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLKQHP
QILVGTPGRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQTLLF
SATMPPEIKRIGVQFMSDPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLIDVQDPD
LTIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILVATDVAA
RGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEIEKLTRV
RMLPLKPPTAEEAFKGQVASAFNDIDELIAQDSTDRYEEAAEKLLETHNATDLVAALLNN
MTKEAASEVPVKITPERPLPRRNKRNNRNGNRNNSHGGNHYRRKNFRRHQHGSHRNDNHG
KSHSSRHSFNIRHRKEN
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttagtgaattaggcttatccgatagcctattaaaagcaatcaaacggagcgga
tacgaagaagcaacaccaattcaagaacaaacgattccaatggttcttgagggtaaggat
gttattggtcaagcacagactggaactggtaagacggctgcttttgggttgccaattatt
gaaaacgttgatactgaaaatcccaatattcaagcaattatcatttcaccaacacgtgaa
ttagcgatccagacccaagaagaactttatcgtctaggtaaagataaacatgttcgcgtg
caggtagtctatggtggggcagatattcggcgccaaattaagagcttgaaacaacacccc
caaattctcgtggggacccctggacggttacgtgaccatattaaccgtcatacagttaaa
cttgaccacattaagaccctggttctcgatgaagcagatgaaatgctaaacatgggattc
ttagaagatattgaatccatcatcaaggaaacaccagatgatcggcaaactttgctcttc
tcagcaaccatgccaccagaaatcaagcgaattggggttcaatttatgtctgatccggaa
actgtgcggatcaaggccaaggaattgactactgacttagttgatcagtactatgttcgc
gctcgtgactatgaaaagtttgacatcatgacccgcttaattgatgttcaagatcctgac
ttaacaattgtctttggtcggacaaagcggcgggtagatgaattgtcgaagggcttgatt
gcgcgtggctacaatgcagctggtatccatggtgaccttactcaggataagcgttctaag
atcatgtggaagtttaagaacaatgaacttgatatcttagttgcaacagatgtggctgcc
cggggcttagacatttcgggggttacgcatgtttataattatgatattccatctgaccca
gacagctatgttcaccggattggccgaacaggacgggccggacatcacggggtatcttta
acctttgtgactccaaatgagatggattaccttcatgagattgaaaaattaacccgggta
cggatgttgccactcaagccaccaacagctgaagaagcatttaagggtcaagtagcatcg
gcctttaatgatatcgatgaattaatcgcgcaggattcaactgatcgttatgaagaagcc
gctgaaaagctattagaaactcataatgcaactgacctagtagcagcattgttaaataac
atgacgaaggaagcagcgagtgaggttcccgttaagattacccctgagcgtccccttcca
cggcgtaataagcggaataaccgtaatggcaaccgcaataactcgcatggtggcaaccac
taccggcgtaagaatttccgtcgtcaccaacatggcagtcatcgaaatgataaccatggg
aagagccattccagtcgtcattcatttaatattcggcaccggaaagaaaattaa
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