Lynx rufus (bobcat): 124510957 Help Entry 124510957         CDS       T08475                                  Name (RefSeq) DNA ligase 1 isoform X1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism lruf  Lynx rufus (bobcat) Pathway lruf03030   DNA replication lruf03410   Base excision repair lruf03420   Nucleotide excision repair lruf03430   Mismatch repair Brite KEGG Orthology (KO) [BR:lruf00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     124510957    03410 Base excision repair     124510957    03420 Nucleotide excision repair     124510957    03430 Mismatch repair     124510957  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:lruf03032]     124510957    03400 DNA repair and recombination proteins [BR:lruf03400]     124510957 Enzymes [BR:lruf01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      124510957     6.5.1.6  DNA ligase (ATP or NAD+)      124510957     6.5.1.7  DNA ligase (ATP, ADP or GTP)      124510957 DNA replication proteins [BR:lruf03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     124510957  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      124510957 DNA repair and recombination proteins [BR:lruf03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      124510957    NER (nucleotide excision repair)     Other NER factors      124510957    MMR (mismatch excision repair)     Other MMR factors      124510957 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DDR PucR Motif Other DBs NCBI-GeneID:  124510957 NCBI-ProteinID:  XP_046933676 LinkDB All DBs Position Unknown AA seq 936 aa AA seqDB search MRNRLSPPGTSGWRRGGRENSDVTMQRSIMSFFHPKKEGKAKKPEKETSSRETEPPPKVA LKERNGEVPENDSPVKRPGRKAARVLGSEGEEEDEALMPSKGQKPAPGSPQVSPPSPVTF PEGSPPLSNTSPAGLSPTGIPKRRTARKQLPKRPIQDILEEQSKDEDREAKRKKEEAETP TESLTEPELAQKEEAEGDRPTTPAEHLETSPAEPPTDSTSEPEVAGKQEAREGDQAKPPP RAPKTVSSFFAPRKPATKKEGKEEGPGAPRKEEAKGPLDPPGYNPAKNNYHPVDDACWKP GQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPILYLSLNRLGPPQQ GLELGVGDGVLLKAVAQATGRQLESVKAEAAEKGDVGLVAENSRSTQRLMLPPPALTAAG VFAKFRDIAGLAGSASTAKKMDVIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAAL AQAVSLTPPGQDFPPAVVDAGKGRTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEH GLEHLPEHCRLSPGVPLKPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGE VKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKR KEVDAADIQVQVCLYAFDLLYLNGESLVREPLSRRRQLLRENFVQTEGEFVFATSLDTKD TDQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIG AYLGRGKRAGRYGGFLLAAYDEESEELQAICKLGTGFSDEELEDHFQSLQALVLPTPRSY VRADGAVAPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFIRVREDKK PEEATTSAQVASLYKKQSQIQNQQGADLDSDPEDFY NT seq 2811 nt NT seq  +upstreamnt  +downstreamnt atgcgtaaccgactgagccccccaggaacatctggctggaggagaggggggagagagaat tcggacgtcaccatgcagcgtagtatcatgtcatttttccaccccaagaaggagggcaaa gcaaaaaagccggagaaagagacctccagcagagagacagagccacctccaaaggtggcg ctgaaggaacggaacggagaggtgcctgagaacgattctccagtgaagaggccagggcgg aaggcggcccgggtcctgggcagcgaaggggaggaggaggacgaagccctcatgccctcc aaaggccagaagccggccccaggctctccacaggtctcccctcccagccctgtcacattt cccgagggcagccctcccctctccaacacctctcctgcgggcctctccccaacggggatc ccgaagcggcgcacagctcggaaacagcttcctaaacggccgattcaggatatcctggaa gaacagagcaaggatgaggacagagaggcaaagaggaagaaggaagaagcagagacccca acagaaagcctcacagagcctgaattggcccaaaaggaggaagcagaaggggaccggccc acgacgcccgctgagcacttagagacctccccagccgagcccccgacagacagcacctca gagcctgaggtggccggaaagcaggaagcacgggaaggggaccaggctaagcctcccccc agagctcccaagacggtcagcagtttcttcgccccccggaagccggcgaccaagaaagaa gggaaagaagagggacctggcgcccctagaaaggaggaggccaaaggacccctggacccc cccggctacaacccggccaagaacaactaccatcccgtcgacgacgcctgctggaagccg ggccagaaggtcccttacctggctgtggcccggacatttgagaagattgaggaggtttct gctcggctccggatggtggagacactgagcaacttgctgcgctccgtggtggccctgtcc cccccagacctgctccccatcctctacctcagcctcaaccgcctcgggccgccccagcag ggcctggagcttggcgtcggggacggtgtcctcctcaaggcggtggcccaggccacgggg cggcagctggagtctgtcaaggccgaggcggccgagaagggcgatgtggggctggtggcc gagaacagccgcagcacccagagactcatgctgcccccgcccgctctcacggccgccggg gtcttcgccaagttccgagacatcgcggggctcgccggcagcgcttccacagccaagaag atggacgtcatcaaaggcctctttgtcgcctgccgtcactcagaagcccgattcatcgcc agagccctgagcggacggctacgcctcgggctggcagagcagtcagtgctggccgccctc gcccaggccgtgagcctcacgccccccggccaagatttccccccggctgtcgtggacgcc gggaagggccggacagcggaggcccggaagacgtggctggaggaacagggcatgatcctg aagcagacgttctgcgaggtgcccgacctggaccggatcatccccgtgctgctggagcat ggcctggagcacctcccggagcactgcaggctgagcccaggggtccccctgaaaccgatg ctggcacaccccacccgcggtgtcagcgaggtcctgaaacgctttgaggaggcggctttc acctgcgagtacaaatacgacgggcagagggcacagatccatgtcctggaaggcggggag gtaaagatcttcagcaggaatcaggaagacaataccggaaagtacccagacatcatcagc cgcatccccaagattaaactgccatcagtcacatccttcatcctggacacggaagccgtg gcttgggaccgggaaaagaagcagatccagccgttccaagtgctcaccacccgcaaacgc aaggaggtggacgcagcagacatccaggtccaggtttgtttgtatgccttcgacctcctc tacctcaacggagagtccctggtacgcgagcccctttcccggcgccgacagctgctccgg gagaacttcgtgcagacggagggcgagttcgtcttcgccacctctctggacaccaaggac acagaccagatcgccgagttcttggagcagtccgtgaaagactcctgcgaggggctgatg gtaaagaccctggacgtcgacgccacctacgagatcgccaagagatcacacaactggctc aagctgaagaaggactacctcgatggcgtgggcgacaccctggacctcgtggtgatcggt gcctacctgggccgtgggaagcgggccggccgctacgggggtttcctgctggcggcctac gacgaggagagtgaggagctccaggccatatgcaagcttggaactggcttcagtgacgag gagctagaggaccatttccagagcctccaggccctggtgctgcccaccccacgctcctac gtccgggccgacggcgccgtggcccccgatcattggctggaccccagtgccgtgtgggag gtgaaatgcgccgatctgtccctgtcccccatctaccccgctgcccggggcctggtggat agcgagaaggggatctccctccgtttcccccggtttattcgcgtccgcgaagacaagaag ccggaggaggctaccaccagtgcccaggtggcctctctgtataagaagcagagtcagatt cagaaccagcagggcgcggacttagactccgacccggaagatttctactag

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