Lynx rufus (bobcat): 124522225
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Entry
124522225 CDS
T08475
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
lruf
Lynx rufus (bobcat)
Pathway
lruf04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
124522225
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
lruf04054
]
124522225
Enzymes [BR:
lruf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124522225
Pattern recognition receptors [BR:
lruf04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
124522225
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
Helicase_C
DEAD
SWI2_SNF2
AAA_19
AAA_22
Motif
Other DBs
NCBI-GeneID:
124522225
NCBI-ProteinID:
XP_046949507
LinkDB
All DBs
Position
Unknown
AA seq
685 aa
AA seq
DB search
MIRSDSRRELRPYQWEVIMPALEGRNIIIWLPTGAGKTRAAAYVAKRHLETVDGAKVVVL
VNRVHLVTQHCEEFSRMLDKRWAITTLSGDMGPRAGFGHLARSHDLLICTAELLQMALTS
PEEEEHVELNAFSLLVVDECHHTHKDTVYNIILSRYLQHKLQRTRPLPQVLGLTASPGTG
GASTLDGAIDHILQLCANLDTWRIMSPQNYRPQLQEHSPQPCKQYNLCHRRGQDPFGDML
KKLMERIHNHLDMPELSRDFGTQTYEQQVVELSQDAAEAGLQQRRVYALHLRRYNDALLI
HHTVRAVDALASLREFYDRERATKTQVLHAERWLLAQFNDYKNELADLATRSPENPKLEM
LEQILQEQFGSSDGRRGILFTQTRQSAHSLLLWLQQQPSLQMLDIRADLLIGAGNSSQNT
HMTQRDQQEVIRKFRAGILNLLVATSVAEEGLDIPQCNVVVRYGLLTNEISMVQARGRAR
AGQSVYSFVATQGSRELRRELTNEALETLMERAVAAVQKMDEAEYQAKIRDLQRAALVKR
AAQAAQRENQRQQFLAEQVQLLCINCMVAVGHGSDLRKVEGAHHVNVNPNFSIYYTVSRG
PVVIDRTFKDWKPGGAIHCRNCGEAWGLQMIYKSVKLPALKVRSMLLETPRGRVQAKKWS
RVPFLVPDFDYLQHCTQNLSDFTLD
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgatcagatcagattccagaagggagctgcgaccctaccagtgggaggtgatcatgcct
gccctggagggcaggaatatcatcatatggctgcccacgggggctgggaagacccgggca
gctgcttatgtggccaagaggcatctagagactgtggacggagccaaggtggtcgtactg
gttaacagggtgcacctggtgacccagcattgcgaggagttcagccgcatgctggacaaa
cgctgggccattacaaccctgagtggggacatggggccacgagctggctttggccacctg
gcccggagccatgacctgctcatctgcacagccgagctgctacagatggcactgaccagc
cccgaggaggaggagcacgtggagctgaacgccttctccctgcttgtggtggatgagtgt
caccacacgcacaaagacaccgtctacaacattatcctgagccggtatctacagcacaaa
ctccagaggacacggcccctgccccaggtgctgggtctcacagcctccccaggcactggt
ggggcgtccacacttgatggggcgattgaccacatcctgcagctctgtgccaacctggac
acgtggcgcatcatgtcaccccagaactaccgcccccagctgcaggagcacagtcctcag
ccctgcaaacagtacaacctctgccacaggcgcggccaggacccatttggggacatgctg
aagaagctcatggagcgaatccacaaccacctggatatgccggagttgagccgggacttc
gggacgcagacttacgagcagcaggtggtggagctgagccaggatgcggccgaggccggg
ctccagcagcgccgggtgtacgcgcttcacctgcggcgctacaacgatgcgctgctcatc
caccacacggtccgtgctgtggacgcactggcctcgctgcgggagttctacgacagggag
cgcgccactaagacccaggtcctgcatgccgagcgctggctgctggcacagttcaatgac
tacaagaatgagctggccgacctggcgacacgtagcccggagaaccccaaactggagatg
ctagaacagatcctgcaagagcagttcggaagctccgacggccgccggggcatcctcttc
acccagacccgccagagcgctcactctctcctgctctggcttcagcagcagccgagcctg
cagatgctggacatcagggccgacctgctgattggggctgggaacagcagccagaacacc
catatgacccagagagaccagcaagaagtgatccggaagttccgggctggcatcctgaac
ctcctggtggctacaagcgtggcggaagaggggctagacatcccccagtgcaatgtggtg
gtgcgctatgggctcctgaccaacgagatctccatggtccaggccaggggccgtgcccgg
gctggtcagagtgtgtactcgtttgtggcgacccaaggcagtcgggagctgcggcgggag
ctgaccaacgaggcgctggagactttgatggagcgggccgtggctgccgtgcagaagatg
gatgaggccgagtaccaggccaagatccgggatctgcagcgggcagccctggtcaagcgg
gccgcccaggcagcccagcgggagaatcagcggcagcagttcctggccgagcaggtgcag
cttctctgcatcaactgcatggtggccgtgggccacgggagtgacctgcggaaggtggag
ggcgcccaccacgtcaacgtgaaccccaacttctcgatctactacactgtctcccggggg
cctgtggtcatcgacagaaccttcaaggactggaagcctgggggtgccattcactgcagg
aactgtggggaggcctggggtctgcagatgatctacaagtcagtgaagctgccagcgctc
aaagttcgcagcatgcttctagagacaccccgagggagagtccaggccaagaagtggtcc
cgcgtgcccttcctcgtgcctgactttgactacctgcaacactgtacccagaacctgtct
gacttcaccctggattga
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