Luteibacter rhizovicinus DSM 16549: BJI69_05315
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Entry
BJI69_05315 CDS
T04563
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
lrz
Luteibacter rhizovicinus DSM 16549
Pathway
lrz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJI69_05315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrz03019
]
BJI69_05315
Enzymes [BR:
lrz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BJI69_05315
Messenger RNA biogenesis [BR:
lrz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BJI69_05315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RhlB
UTP25
HEM4
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
APG03389
UniProt:
A0A0G9HC90
LinkDB
All DBs
Position
complement(1152550..1154331)
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AA seq
593 aa
AA seq
DB search
MSQTVLTDVFYENLDLHPLLHQGLAAAGITRTTPIQALTLPVALLGRDVAGQAQTGTGKT
FAFLVALMNRLLNNPAAPDRKDADPRALIIAPTRELAIQIEKDFQVIGKATGLRSALIYG
GVDYDKQRQQLRDGCDIIIATPGRLLDYYKQDVFGFGSVEVMVIDEADRMFDLGFIKDVR
FIFRRLPAREKRQVLLFSATLSHRVLELAYEHMHEAEKLVVETENVTADRVRQVVYFPSK
EEKMPLLLNLLEESKTERSIIFVNTKAAAERITDRLKRHNFRVGAISGDVPQVKRQKLLQ
RFQDGQIDLLVATDVAARGLHIPAVSHVFNYDLPQDAEDYVHRIGRTARLGAEGDAISFA
CDLYAMGLPDIETYINQKIPTASIEARMLVMPAPRPRADGVQDEIDDPNDNDGHIPTRGA
PPEKGGRSGSRDGRGGPRSGERSGSRERSGSGERRPRTPRPDAPAAVASPVEVPMKTVVV
AETVADLPAAAEAMAAEGAPKKRRRRGGRGRGAREGVENGNGAAVKTDGQAVSTPRQPST
TPRQADGQGNPNRRPSRQVAANRPSANVPAPAASTGQEKVGFFRRIGRLFGGR
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaaactgttctcaccgacgtcttctacgaaaatctcgacctccatccgctgctc
caccagggccttgccgccgccggcatcacccgcaccactccgattcaggcgctgaccctc
ccggtcgccctgcttggccgcgacgtggccgggcaggcgcagacgggtacgggcaagacc
ttcgccttcctcgtggcgctgatgaaccgcctgctcaacaacccggcggccccggatcgc
aaggacgccgatccgcgcgcgctgatcatcgcgccgacgcgagagctggcgatccagatc
gagaaggacttccaggtcatcggcaaggccaccggcctgcgcagcgccctgatctacggc
ggcgtcgactacgacaagcagcgccagcagctgcgcgacggctgcgacatcatcatcgcc
acgccgggtcgcctgctcgattactacaagcaggacgtcttcggcttcggcagtgtcgag
gtcatggtcatcgacgaagccgaccgcatgttcgatctcggcttcatcaaggacgtgcgc
ttcatcttccgtcgcctgccggcccgcgagaagcgccaggtgctgttgttctcggccacc
ttgagccatcgcgtgctcgaactcgcctacgagcacatgcacgaggccgagaagctggtc
gtcgagaccgaaaacgtcaccgccgaccgcgtgcgccaggtcgtctacttcccctccaag
gaagagaagatgccgttgctgctcaacctgctcgaggagagcaagaccgagcgcagcatc
atcttcgtcaacacgaaggccgccgccgagcgcatcaccgatcgcctcaagcgtcacaac
ttccgtgtcggtgccatctcgggcgatgtcccgcaggtgaagcgccagaagctcctccag
cgcttccaggatggtcagatcgatctcctggtcgcgaccgacgtcgccgcccgcggcttg
cacatcccggccgtcagccacgtcttcaactacgacctgccgcaggatgccgaggactat
gtccaccgcatcggccgtaccgcgcgcctgggcgccgaaggcgatgcgatcagcttcgcc
tgcgatctctacgcgatgggcctgccggacatcgaaacctacatcaaccagaagatcccg
accgcctcgatcgaggcccggatgctggtgatgcccgccccgcgcccgcgcgccgacggc
gtgcaggacgagatcgacgacccgaacgacaacgatggccacatcccgacccgcggcgcg
ccgccggagaagggtggtcgcagcggtagccgcgatggccgtggcggtccgcgctcgggc
gagcgctccggtagccgtgagcgttcgggtagcggtgagcgccgcccgcgtacgccccgt
cccgacgcgcccgccgccgttgcctcgcccgtcgaagtgccgatgaagaccgtcgtcgtc
gccgaaaccgtcgccgacctgccggccgcagcggaagccatggctgccgagggcgcgccg
aagaagcgtcgccgtcgtggtggccgcggtcgcggcgcccgcgagggtgtcgagaacggc
aacggcgccgccgtgaagaccgacggtcaggcggtatccacgccgcgccagccgtccacg
acaccgcgccaggccgacggccagggcaatccgaaccgtcgtccgtcgcgccaggtggct
gccaaccgtccttcggcgaacgtgccggcgccggctgcctcgacggggcaggaaaaggtg
ggtttcttccgtcggatcggtcgtctgttcggcggtcggtaa
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