KEGG   Luteibacter rhizovicinus DSM 16549: BJI69_07970
Entry
BJI69_07970       CDS       T04563                                 
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
lrz  Luteibacter rhizovicinus DSM 16549
Pathway
lrz03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:lrz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BJI69_07970
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lrz03400]
    BJI69_07970
Enzymes [BR:lrz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BJI69_07970
DNA repair and recombination proteins [BR:lrz03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BJI69_07970
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: APG03850
UniProt: A0A0G9HA92
LinkDB
Position
complement(1768026..1770587)
AA seq 853 aa
MSLQEYRRKRNFTRTREPSPEGSARGKGRAIFVVQLHHASHRHFDFRLQVGDVLRSWAVP
KGPSYDPKVKRLAVEVEDHPVSYAGFEGEIEEGYGKGHVDTFDRGVWSTAGDVEAQLLKG
HLTFELFGKRLKGSWHLVRSGKKERQPSWFLIKATDAYASDIEADDLLDAKMRKSTRRAQ
KATSAGTATKKVAATKASSAKTKSRRVSVATLTKAAVALEGTRKAKASTDFFPPQLARLR
ETPPQGDAWLHEVKWDGYRILASVAKGKVMLWSRNALPWNDRLPEIVAAIEGLGLESARL
DGELIALDAQGRSDFNALQRTLSGDMQAPLAYMLFDMPYLQGYDLGKVALAQRKTLLERL
LSHAPRLLSYSGHNLGDGDQVFAMAMEQKLEGIISKRADGGYRAGRGDDWLKIKRLESDE
FAVVGYTPAKGSRLTFGSLLLARPDADGGWTYAGRVGTGFTDEMLRELGKTLTKAGSKTP
SVRIDAVDPTLRGALWVPPTAVAEVYYRGIGNKNLLRQPSLKALRVDKAPGDLRDSDRKP
APKRGAKAATASKSAAAAAVASPVVITHPERVVFPDDGITKQQVVDYYRAVMPWLLPAIA
DRPTSTIRCPGGIASPCFFQKHVMARLEHVGTARLKEETGAQAVYLYPRDESGVIELVQF
GAVEFHPWGSHIGSPDIADRVVFDLDPGEDVEWRRVIAAARMVRGFLDELGLVSFVRTTG
GKGLHVVVPLNPGADWATVKGFARGFAETLAQLHPLEFVATASKRFRRGKIYVDYLRNGR
GATAVASYSLRSRPGAPVAVPLRWDELGKLKSGNAFDLATVPKRLARLRKDPWEGIDAVK
QDLEAVNETLAAR
NT seq 2562 nt   +upstreamnt  +downstreamnt
atgagcctgcaggaatatcgccgcaagcggaacttcaccaggacacgcgagccgtctccc
gaaggatccgcgcgcggcaaagggcgcgccatcttcgttgtccagctgcatcatgcatcg
caccggcacttcgacttccggctgcaggtcggcgatgtcctgcggagctgggccgtcccc
aagggcccaagctatgacccgaaggtgaagcgcctcgccgtcgaggtcgaggaccatccc
gtgtcgtatgccgggttcgagggcgagatcgaggaaggctatggcaaggggcacgtcgac
acgttcgaccgtggcgtctggtccaccgccggggatgtcgaggcgcagctgctcaaaggt
cacctcaccttcgagctcttcggtaaacgcctgaaggggagttggcatctggtgcgtagc
ggaaagaaggagcgccagccgtcgtggttcctgataaaggcgaccgacgcctacgcgagt
gacatcgaggccgacgatctgctcgacgcgaaaatgcggaaaagcacgcgccgggcgcag
aaggctaccagcgcggggaccgccacgaaaaaggtcgccgcgacgaaagcctcttccgcg
aagacgaagtcgcgccgcgtttccgtcgccaccttgaccaaggcggccgtcgcgctcgag
ggaacgcgcaaggcgaaagcctccaccgatttcttcccaccccagctggcgcgcttgcgt
gaaacaccgccgcaaggtgacgcctggttgcacgaggtgaagtgggacggttatcgcatt
cttgccagcgtggccaagggcaaggtgatgctgtggtcgcgcaacgccctgccctggaac
gatcgcctgccggagatcgtcgccgccatcgaaggcctcggcctggagagcgcccgcctc
gacggcgaactcatcgccctggatgcgcagggccgcagcgacttcaatgccctccagcgc
accctgtccggcgacatgcaggcgccgcttgcgtacatgctcttcgacatgccctatctg
cagggctacgacctcggcaaggtcgcgctcgcgcagcggaagaccttgctcgaacgcctg
ctctcgcatgcaccgcgcctgctctcttacagcgggcacaacctcggcgacggcgaccag
gtgtttgccatggccatggaacagaaactcgaaggcatcatctccaagcgcgccgacggc
ggctatcgcgcgggacgcggcgacgactggctgaagatcaagcgcctggagagcgacgag
ttcgcggtggtcggctacaccccggccaagggttcccgcctgacgttcggctcgctgctt
ctggcgaggcccgatgcggatggcggctggacctatgctgggcgggtcggcacaggcttt
accgacgagatgctgcgtgagctgggcaagacgctgacgaaggcgggatcgaagacgccg
agcgtgcgcatcgatgccgtcgatccgacgctgcgtggggcactctgggtgccgccgacc
gcggtggcggaggtctactaccgcggcatcggcaacaagaatctcctgcgccagcccagc
ctgaaggcgctacgggtggacaaggcgcccggcgacctgcgcgactccgatcggaagcct
gcgcccaagcgaggcgccaaagccgccaccgcaagcaagtccgcagccgcagccgccgtc
gcctcgccggtcgtcattacccatcccgagcgcgtcgtctttcccgacgatggcatcacc
aagcagcaggtggtcgattactaccgcgccgtcatgccgtggctcctgcccgccatcgcc
gaccggccgacttcgaccattcgttgcccaggcggcatcgcctcgccatgcttcttccag
aagcacgtgatggcgcgcctcgaacacgtcggcaccgcccgactcaaagaggagaccggc
gcgcaggcggtctacctctatcccagggacgaatctggcgtgatcgagctggtccagttc
ggcgcggtggaattccacccgtggggttcgcacatcggatcgcccgacatcgccgatcgc
gtcgtcttcgatctcgatcccggcgaggacgtcgagtggcgccgtgtgatcgccgcggcg
cgcatggtccgtggcttcctcgacgagctggggctggtttcgttcgtgcggaccaccggc
ggcaagggtctgcacgtggtcgtccccctgaatccgggggccgactgggccacggtgaag
ggcttcgcccgcggctttgccgaaacgctggcgcagctgcatccgctggagttcgtcgcg
acggcgagcaagcgtttccggcgcggcaagatctacgtggactatctgcgcaacgggcgc
ggcgcgaccgcggtcgcctcctattccctgcggtccaggccgggtgcccccgtcgccgtg
ccgctgcgctgggacgaactgggcaagctcaaatccggcaacgccttcgacctggccacc
gtcccgaaacgcctggcgcgcctcaggaaggacccgtgggaaggcatcgacgcggtaaaa
caggacctcgaagcggtcaacgaaaccctcgcggcacgctag

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