Luteibacter rhizovicinus DSM 16549: BJI69_07970
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Entry
BJI69_07970 CDS
T04563
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lrz
Luteibacter rhizovicinus DSM 16549
Pathway
lrz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lrz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BJI69_07970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lrz03400
]
BJI69_07970
Enzymes [BR:
lrz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BJI69_07970
DNA repair and recombination proteins [BR:
lrz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BJI69_07970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
APG03850
UniProt:
A0A0G9HA92
LinkDB
All DBs
Position
complement(1768026..1770587)
Genome browser
AA seq
853 aa
AA seq
DB search
MSLQEYRRKRNFTRTREPSPEGSARGKGRAIFVVQLHHASHRHFDFRLQVGDVLRSWAVP
KGPSYDPKVKRLAVEVEDHPVSYAGFEGEIEEGYGKGHVDTFDRGVWSTAGDVEAQLLKG
HLTFELFGKRLKGSWHLVRSGKKERQPSWFLIKATDAYASDIEADDLLDAKMRKSTRRAQ
KATSAGTATKKVAATKASSAKTKSRRVSVATLTKAAVALEGTRKAKASTDFFPPQLARLR
ETPPQGDAWLHEVKWDGYRILASVAKGKVMLWSRNALPWNDRLPEIVAAIEGLGLESARL
DGELIALDAQGRSDFNALQRTLSGDMQAPLAYMLFDMPYLQGYDLGKVALAQRKTLLERL
LSHAPRLLSYSGHNLGDGDQVFAMAMEQKLEGIISKRADGGYRAGRGDDWLKIKRLESDE
FAVVGYTPAKGSRLTFGSLLLARPDADGGWTYAGRVGTGFTDEMLRELGKTLTKAGSKTP
SVRIDAVDPTLRGALWVPPTAVAEVYYRGIGNKNLLRQPSLKALRVDKAPGDLRDSDRKP
APKRGAKAATASKSAAAAAVASPVVITHPERVVFPDDGITKQQVVDYYRAVMPWLLPAIA
DRPTSTIRCPGGIASPCFFQKHVMARLEHVGTARLKEETGAQAVYLYPRDESGVIELVQF
GAVEFHPWGSHIGSPDIADRVVFDLDPGEDVEWRRVIAAARMVRGFLDELGLVSFVRTTG
GKGLHVVVPLNPGADWATVKGFARGFAETLAQLHPLEFVATASKRFRRGKIYVDYLRNGR
GATAVASYSLRSRPGAPVAVPLRWDELGKLKSGNAFDLATVPKRLARLRKDPWEGIDAVK
QDLEAVNETLAAR
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcaggaatatcgccgcaagcggaacttcaccaggacacgcgagccgtctccc
gaaggatccgcgcgcggcaaagggcgcgccatcttcgttgtccagctgcatcatgcatcg
caccggcacttcgacttccggctgcaggtcggcgatgtcctgcggagctgggccgtcccc
aagggcccaagctatgacccgaaggtgaagcgcctcgccgtcgaggtcgaggaccatccc
gtgtcgtatgccgggttcgagggcgagatcgaggaaggctatggcaaggggcacgtcgac
acgttcgaccgtggcgtctggtccaccgccggggatgtcgaggcgcagctgctcaaaggt
cacctcaccttcgagctcttcggtaaacgcctgaaggggagttggcatctggtgcgtagc
ggaaagaaggagcgccagccgtcgtggttcctgataaaggcgaccgacgcctacgcgagt
gacatcgaggccgacgatctgctcgacgcgaaaatgcggaaaagcacgcgccgggcgcag
aaggctaccagcgcggggaccgccacgaaaaaggtcgccgcgacgaaagcctcttccgcg
aagacgaagtcgcgccgcgtttccgtcgccaccttgaccaaggcggccgtcgcgctcgag
ggaacgcgcaaggcgaaagcctccaccgatttcttcccaccccagctggcgcgcttgcgt
gaaacaccgccgcaaggtgacgcctggttgcacgaggtgaagtgggacggttatcgcatt
cttgccagcgtggccaagggcaaggtgatgctgtggtcgcgcaacgccctgccctggaac
gatcgcctgccggagatcgtcgccgccatcgaaggcctcggcctggagagcgcccgcctc
gacggcgaactcatcgccctggatgcgcagggccgcagcgacttcaatgccctccagcgc
accctgtccggcgacatgcaggcgccgcttgcgtacatgctcttcgacatgccctatctg
cagggctacgacctcggcaaggtcgcgctcgcgcagcggaagaccttgctcgaacgcctg
ctctcgcatgcaccgcgcctgctctcttacagcgggcacaacctcggcgacggcgaccag
gtgtttgccatggccatggaacagaaactcgaaggcatcatctccaagcgcgccgacggc
ggctatcgcgcgggacgcggcgacgactggctgaagatcaagcgcctggagagcgacgag
ttcgcggtggtcggctacaccccggccaagggttcccgcctgacgttcggctcgctgctt
ctggcgaggcccgatgcggatggcggctggacctatgctgggcgggtcggcacaggcttt
accgacgagatgctgcgtgagctgggcaagacgctgacgaaggcgggatcgaagacgccg
agcgtgcgcatcgatgccgtcgatccgacgctgcgtggggcactctgggtgccgccgacc
gcggtggcggaggtctactaccgcggcatcggcaacaagaatctcctgcgccagcccagc
ctgaaggcgctacgggtggacaaggcgcccggcgacctgcgcgactccgatcggaagcct
gcgcccaagcgaggcgccaaagccgccaccgcaagcaagtccgcagccgcagccgccgtc
gcctcgccggtcgtcattacccatcccgagcgcgtcgtctttcccgacgatggcatcacc
aagcagcaggtggtcgattactaccgcgccgtcatgccgtggctcctgcccgccatcgcc
gaccggccgacttcgaccattcgttgcccaggcggcatcgcctcgccatgcttcttccag
aagcacgtgatggcgcgcctcgaacacgtcggcaccgcccgactcaaagaggagaccggc
gcgcaggcggtctacctctatcccagggacgaatctggcgtgatcgagctggtccagttc
ggcgcggtggaattccacccgtggggttcgcacatcggatcgcccgacatcgccgatcgc
gtcgtcttcgatctcgatcccggcgaggacgtcgagtggcgccgtgtgatcgccgcggcg
cgcatggtccgtggcttcctcgacgagctggggctggtttcgttcgtgcggaccaccggc
ggcaagggtctgcacgtggtcgtccccctgaatccgggggccgactgggccacggtgaag
ggcttcgcccgcggctttgccgaaacgctggcgcagctgcatccgctggagttcgtcgcg
acggcgagcaagcgtttccggcgcggcaagatctacgtggactatctgcgcaacgggcgc
ggcgcgaccgcggtcgcctcctattccctgcggtccaggccgggtgcccccgtcgccgtg
ccgctgcgctgggacgaactgggcaagctcaaatccggcaacgccttcgacctggccacc
gtcccgaaacgcctggcgcgcctcaggaaggacccgtgggaaggcatcgacgcggtaaaa
caggacctcgaagcggtcaacgaaaccctcgcggcacgctag
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