KEGG   Leifsonia shinshuensis: F1C12_01125
Entry
F1C12_01125       CDS       T06806                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
lse  Leifsonia shinshuensis
Pathway
lse03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:lse00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    F1C12_01125
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lse03400]
    F1C12_01125
Enzymes [BR:lse01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     F1C12_01125
DNA repair and recombination proteins [BR:lse03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     F1C12_01125
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M LigD_N DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: QNE33881
UniProt: A0A7G6Y5W6
LinkDB
Position
complement(223740..226196)
AA seq 818 aa
MVAEDTETVSIDGHRLRLTNLDKVMYPETGTTKADVIGYYNAIADVMIPHTRDRIATRKR
WVHGVGTPEKPGEVFFQKNLDPASTPGWVKQRTITHKTSANTYPLVNDRATLVWLAQIAS
LELHVPQWRVGRGDTRHNPDRLVLDLDPGEGATLQDCAEVARLARAILADMGLDPLPVTS
GSKGIHLYAPLDGSQTSDQVSAVAHELARALEADHPDLVVSDMKKTLREGKVLVDWSQNN
GAKTTIAPYSLRGRFRPTVAAPRTWRELASKDLRQLEYPEVLERVKRRGDPLADLSAGRA
VAEENSAADTDRLTTYRSKRDAAKTPEPVPSVSPDAAEGRSFVIQEHHARRLHWDFRLQH
DGVLVSWALPKGPPDDPKQNHLAVHVEDHPLEYGTFAGDIPHGEYGAGHVDIWDHGEYEL
EKWRDDEVIATLHGQPDGGLGGEPRKFALIATKQGGDEKNWLIHLMKDAGTAAAKKPARS
ASAKPVTEKIITPKRITEKPVSPMLATLGSRADIHDESEWAFEMKWDGIRAVSVVRGGAL
RLTTRNGNDVTGTYPELAALIGLAGDHDLVLDGEIVTLTPQGRPDFGLLQTRMGLTRPAE
VRAAAERAPAHYFVFDLLELDGTDLRKKTYDERRAALQDTLRPPKDDPVQVPPAFAGDVD
HAISSSRELGLEGVMAKQRDGTYATGRRSRTWIKIKHHLTQEVVIGGWTPGNGRRANSIG
ALLLGIPDGDGLRYVGKVGIGFTDAMLDDLAKKLAAHPRTTPPLTGVPSLDARGAHWVRP
EYVGEVEFAEWTGTDRLRQPSWRGLRPDKRVDQVVKES
NT seq 2457 nt   +upstreamnt  +downstreamnt
atggttgcggaggacaccgagacggtctcgatcgacggccaccggctgcggctgacgaac
ctcgacaaggtcatgtacccggagaccgggaccacgaaggccgacgtgatcggctactac
aacgccatcgccgacgtgatgatcccacacacccgcgaccgcatcgccacccgcaaacgc
tgggtgcacggagtcgggacgccggagaagcccggcgaggtcttcttccagaagaacctg
gacccggcctccactccgggctgggtgaagcagcgcacgatcacgcacaagaccagcgcc
aacacctacccgctggtcaacgaccgggcgaccctggtctggctggcgcagatcgcgtcg
ctggagctgcacgtgccgcagtggcgggtgggccgcggcgacacgcggcacaacccggac
cggctggtgctcgacctcgatccgggcgagggcgcgacgctgcaggactgcgcggaggtc
gcccggctggcccgcgccatcctcgccgacatggggctcgacccgctgccggtgacgagc
gggtcgaagggcatccacctctacgcgccgctcgacggctcgcagaccagcgaccaggtc
tccgcggtcgcgcacgagctggccagggcgctggaggccgaccaccccgacctcgtcgtc
agcgacatgaagaagacgctgcgcgaaggcaaggtgctggtcgactggagccagaacaac
ggcgcgaagacgacgatcgcgccgtactcgctgcgtggccggttccggccgacggtcgcg
gcgccgcgcacgtggcgggagctggcctcgaaggacctgcgccagctcgagtacccggag
gtgctggagcgggtgaagcgccgcggcgacccgctggcggacctgtcggcggggcgggcc
gtcgccgaggagaacagcgcggcggacaccgaccggctcacgacgtatcgctcgaagcgc
gacgccgccaagaccccggagccggtgccgtcggtcagcccggacgccgccgagggccgc
tcgttcgtcatccaggagcaccacgccaggcggctgcactgggacttccgcctccagcac
gacggcgtgctggtcagctgggcgttgccgaaggggccgccggacgacccgaagcagaac
cacctcgccgtgcacgtggaggaccatccgctggagtacgggacgttcgcgggcgacatc
ccgcacggcgagtacggcgcgggccacgtcgacatctgggaccacggcgagtacgagctg
gagaagtggcgcgacgacgaggtgatcgcgacgctgcacgggcagccggacggcggcctg
ggcggggagccgcggaagttcgcgctcatcgcgacgaagcagggcggggatgagaagaac
tggctcatccacctgatgaaggacgcggggacggctgcggcgaagaagccggcgcgctcc
gcctccgcgaagcccgtcacagagaagatcatcacccccaagcgcatcacagagaagccc
gtctcccccatgctcgccacgctcggctcgcgcgctgacatccacgacgagtccgagtgg
gcgttcgagatgaagtgggacggcatccgggcggtctcggtcgtgcgcggcggcgccctg
cggcttaccacccgcaacggcaacgacgtcaccggcacctatcccgagctcgccgcgctc
atcggcctggcgggcgaccacgatctcgtcctggacggcgagatcgtcacgctgaccccg
cagggccggcccgacttcggcctgctgcagacccggatgggcctcacccgtccggcggag
gtgcgcgccgcggcggagcgggcgcccgcgcactacttcgtcttcgacctcctcgaactc
gacgggaccgacctccgaaagaagacgtacgacgagcgccgcgccgccctccaggacacc
ctgcgcccgccgaaggacgacccggtgcaggtccccccggcgttcgccggcgacgtcgac
cacgccatctcctcgtcccgggagctgggcctggagggcgtcatggccaagcagcgcgac
ggcacgtacgcgacgggccggcgctcccgcacctggatcaagatcaagcaccacctcacg
caggaggtcgtcatcggcggctggacccccggcaacggccgccgcgccaacagcatcggg
gcgctgctgctcggcattccggacggcgacggcctgcgctacgtcggcaaggtggggatt
ggcttcaccgacgcgatgctggacgacctggcgaagaagctcgcagcccacccgcggacg
actcccccgctgacgggcgtcccgtcgctcgacgcgcgcggcgcgcactgggtgcggccg
gagtacgtcggcgaggtcgagttcgccgagtggacaggcaccgaccgactgcgtcagccg
tcgtggcgcgggctgcgtcccgacaagcgcgtcgaccaggtcgtcaaggagagctga

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