Leifsonia shinshuensis: F1C12_01125
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Entry
F1C12_01125 CDS
T06806
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lse
Leifsonia shinshuensis
Pathway
lse03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
F1C12_01125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lse03400
]
F1C12_01125
Enzymes [BR:
lse01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
F1C12_01125
DNA repair and recombination proteins [BR:
lse03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
F1C12_01125
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QNE33881
UniProt:
A0A7G6Y5W6
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All DBs
Position
complement(223740..226196)
Genome browser
AA seq
818 aa
AA seq
DB search
MVAEDTETVSIDGHRLRLTNLDKVMYPETGTTKADVIGYYNAIADVMIPHTRDRIATRKR
WVHGVGTPEKPGEVFFQKNLDPASTPGWVKQRTITHKTSANTYPLVNDRATLVWLAQIAS
LELHVPQWRVGRGDTRHNPDRLVLDLDPGEGATLQDCAEVARLARAILADMGLDPLPVTS
GSKGIHLYAPLDGSQTSDQVSAVAHELARALEADHPDLVVSDMKKTLREGKVLVDWSQNN
GAKTTIAPYSLRGRFRPTVAAPRTWRELASKDLRQLEYPEVLERVKRRGDPLADLSAGRA
VAEENSAADTDRLTTYRSKRDAAKTPEPVPSVSPDAAEGRSFVIQEHHARRLHWDFRLQH
DGVLVSWALPKGPPDDPKQNHLAVHVEDHPLEYGTFAGDIPHGEYGAGHVDIWDHGEYEL
EKWRDDEVIATLHGQPDGGLGGEPRKFALIATKQGGDEKNWLIHLMKDAGTAAAKKPARS
ASAKPVTEKIITPKRITEKPVSPMLATLGSRADIHDESEWAFEMKWDGIRAVSVVRGGAL
RLTTRNGNDVTGTYPELAALIGLAGDHDLVLDGEIVTLTPQGRPDFGLLQTRMGLTRPAE
VRAAAERAPAHYFVFDLLELDGTDLRKKTYDERRAALQDTLRPPKDDPVQVPPAFAGDVD
HAISSSRELGLEGVMAKQRDGTYATGRRSRTWIKIKHHLTQEVVIGGWTPGNGRRANSIG
ALLLGIPDGDGLRYVGKVGIGFTDAMLDDLAKKLAAHPRTTPPLTGVPSLDARGAHWVRP
EYVGEVEFAEWTGTDRLRQPSWRGLRPDKRVDQVVKES
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atggttgcggaggacaccgagacggtctcgatcgacggccaccggctgcggctgacgaac
ctcgacaaggtcatgtacccggagaccgggaccacgaaggccgacgtgatcggctactac
aacgccatcgccgacgtgatgatcccacacacccgcgaccgcatcgccacccgcaaacgc
tgggtgcacggagtcgggacgccggagaagcccggcgaggtcttcttccagaagaacctg
gacccggcctccactccgggctgggtgaagcagcgcacgatcacgcacaagaccagcgcc
aacacctacccgctggtcaacgaccgggcgaccctggtctggctggcgcagatcgcgtcg
ctggagctgcacgtgccgcagtggcgggtgggccgcggcgacacgcggcacaacccggac
cggctggtgctcgacctcgatccgggcgagggcgcgacgctgcaggactgcgcggaggtc
gcccggctggcccgcgccatcctcgccgacatggggctcgacccgctgccggtgacgagc
gggtcgaagggcatccacctctacgcgccgctcgacggctcgcagaccagcgaccaggtc
tccgcggtcgcgcacgagctggccagggcgctggaggccgaccaccccgacctcgtcgtc
agcgacatgaagaagacgctgcgcgaaggcaaggtgctggtcgactggagccagaacaac
ggcgcgaagacgacgatcgcgccgtactcgctgcgtggccggttccggccgacggtcgcg
gcgccgcgcacgtggcgggagctggcctcgaaggacctgcgccagctcgagtacccggag
gtgctggagcgggtgaagcgccgcggcgacccgctggcggacctgtcggcggggcgggcc
gtcgccgaggagaacagcgcggcggacaccgaccggctcacgacgtatcgctcgaagcgc
gacgccgccaagaccccggagccggtgccgtcggtcagcccggacgccgccgagggccgc
tcgttcgtcatccaggagcaccacgccaggcggctgcactgggacttccgcctccagcac
gacggcgtgctggtcagctgggcgttgccgaaggggccgccggacgacccgaagcagaac
cacctcgccgtgcacgtggaggaccatccgctggagtacgggacgttcgcgggcgacatc
ccgcacggcgagtacggcgcgggccacgtcgacatctgggaccacggcgagtacgagctg
gagaagtggcgcgacgacgaggtgatcgcgacgctgcacgggcagccggacggcggcctg
ggcggggagccgcggaagttcgcgctcatcgcgacgaagcagggcggggatgagaagaac
tggctcatccacctgatgaaggacgcggggacggctgcggcgaagaagccggcgcgctcc
gcctccgcgaagcccgtcacagagaagatcatcacccccaagcgcatcacagagaagccc
gtctcccccatgctcgccacgctcggctcgcgcgctgacatccacgacgagtccgagtgg
gcgttcgagatgaagtgggacggcatccgggcggtctcggtcgtgcgcggcggcgccctg
cggcttaccacccgcaacggcaacgacgtcaccggcacctatcccgagctcgccgcgctc
atcggcctggcgggcgaccacgatctcgtcctggacggcgagatcgtcacgctgaccccg
cagggccggcccgacttcggcctgctgcagacccggatgggcctcacccgtccggcggag
gtgcgcgccgcggcggagcgggcgcccgcgcactacttcgtcttcgacctcctcgaactc
gacgggaccgacctccgaaagaagacgtacgacgagcgccgcgccgccctccaggacacc
ctgcgcccgccgaaggacgacccggtgcaggtccccccggcgttcgccggcgacgtcgac
cacgccatctcctcgtcccgggagctgggcctggagggcgtcatggccaagcagcgcgac
ggcacgtacgcgacgggccggcgctcccgcacctggatcaagatcaagcaccacctcacg
caggaggtcgtcatcggcggctggacccccggcaacggccgccgcgccaacagcatcggg
gcgctgctgctcggcattccggacggcgacggcctgcgctacgtcggcaaggtggggatt
ggcttcaccgacgcgatgctggacgacctggcgaagaagctcgcagcccacccgcggacg
actcccccgctgacgggcgtcccgtcgctcgacgcgcgcggcgcgcactgggtgcggccg
gagtacgtcggcgaggtcgagttcgccgagtggacaggcaccgaccgactgcgtcagccg
tcgtggcgcgggctgcgtcccgacaagcgcgtcgaccaggtcgtcaaggagagctga
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