Legionella sainthelensi: CAB17_12145
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Entry
CAB17_12145 CDS
T05293
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lsh
Legionella sainthelensi
Pathway
lsh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CAB17_12145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsh03400
]
CAB17_12145
Enzymes [BR:
lsh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CAB17_12145
DNA repair and recombination proteins [BR:
lsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CAB17_12145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
DUF1474
RecG_dom3_C
DUF4962
Motif
Other DBs
NCBI-ProteinID:
AUH72716
UniProt:
A0A2H5FMD7
LinkDB
All DBs
Position
complement(1252232..1255690)
Genome browser
AA seq
1152 aa
AA seq
DB search
MSISTLLFQPTQAKQTWGQLHGSSLALALAEYCQQTSGIKLLIAQDNLSANQLQAELTFF
LNSTSSQELLFFPDWETLPYDQFSPHQDIISERLYALSRIQQVTDAIIITSASTLMHRLC
PPEFLNQYALMLKEGQKLDLNTFRNQLQQSGYHCVNKVLEHGEYALRGSIIDVYPMGSGL
PFRIELFDDEIESLREFDTDTQRTIEKIKEINVLPAREFPLNEQSQLKFRRAFRELFSGN
PSQCPIYEAISEGQFPSGIEYYLPLFFDKTVTFFDYLPSTAKVCFIENIQTKAEQFWQEL
NERFEQRRYDISRPILSPSTCFIDPNELLTLANTYQQLRLFHHASDKKGAVNFEITPGPQ
LPIDRKTQEPLSKLREYCSNSSRRYLIVVESAGRREVLLDLLKPSGLTAKVQSSWDSFIH
DTAKLNISTGALIYGCELVQNNIVIIVESQLFGEQSTPQRRSSQKLVDPDLIIRDMAELR
IGAPVVHLQFGVGRYQGLQHIESNGMASEFLILAYAGEDKIYVPVTSLHLISRYTGVDSE
HAPLHKLGTDQWQKEKKKAAEKIHDVAIELLDLYAKREAQPGYQYQVDHSDYAKFASAFP
FTETPDQLNAIEQIIKDMESSRPMDRLICGDVGFGKTEVAMRAAFVAVQSNKQVCILVPT
TLLAGQHFESFRDRFADFPINIELLSRFRSNKESEAVLAGLKSGTVDIVIGTHKLFQSSI
AFKNLGLLIIDEEHRFGVKQKEHIKALRTHVDILSMTATPIPRTLNMAMAGIRDISLMTT
PPAKRLAIKTFWQEKKDPIVREAILREILRGGQVFFLHNNVETIERICEDLQTLVPEAKI
RSAHGQMRERELERVMSDFYHHRFNVLVCTTIIETGIDIPTANTIIIDRADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPNEKSLTSDAVKRLEAIVSLEDLGAGFTLATHDLEIRGAGEL
LGEEQSGNMHAIGFNLFMEMLDRAVNDLKAGKTPELSAPMYQGPEIDLRISAVIPDEYIS
DVHNRLIMYKRISNAKNNQQLHELQIELIDRFGLLPQQVKHLLLITELKLKAEKMGIQKI
SAGAQQGKIEFGDAPTIDTGVLISLIQVHAKRYKMDGPQCLRFTLDSTSAEERLFEIGSL
LHKLAGSKVPIS
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgtccataagtacactactcttccaaccaacacaagccaaacaaacatggggacaactc
catggcagtagcctggcacttgcactagcagagtattgccaacaaacatctggaattaag
cttttgattgcacaagacaatctgagtgctaatcaattacaagcagagttaaccttcttt
ctaaattcgacttcatctcaagaattacttttttttcctgattgggaaacactaccttat
gaccaattttccccacatcaggatattatttctgaaagattatatgctttaagtcgcatt
caacaagtgactgacgcaattattatcacttcagcaagtaccttgatgcataggttatgt
cctcctgaatttttgaatcaatatgcattaatgcttaaagaaggacaaaaattagactta
aatacttttcgaaaccaactccagcaatctggatatcattgtgtcaataaagtactcgaa
catggtgagtatgctttacggggctccattattgatgtctaccccatgggctcaggttta
ccatttcgtatcgaactctttgatgatgaaattgaaagtttacgagaatttgatactgat
acacagcgcaccatagaaaaaattaaagaaatcaatgtattacccgccagggaattccct
ttaaacgaacaaagccaactaaaatttcggcgtgcttttagagagttattttctggaaac
cccagccaatgtccgatttatgaagcaatcagcgagggacaatttccatctggcattgaa
tactatctccctttattttttgacaaaacagtcactttttttgattatcttccaagcacc
gctaaggtatgcttcattgaaaacattcaaaccaaagcagagcaattctggcaagaatta
aatgaacgttttgaacaaagacgatacgacattagcaggcctattttatctccatcgacc
tgttttatcgatcccaatgaactattaactctggcaaatacttaccaacaattacgttta
tttcatcatgcttcagataaaaaaggtgcagtgaattttgaaattactcctggcccacaa
ttaccgattgataggaaaacccaagagcctttaagtaagttacgtgagtattgttctaat
tcttctaggcgctatttaattgtggttgaaagtgctggacgacgtgaagtgttacttgat
ctgctaaaaccaagtggactcacggcaaaagtacagtcatcttgggatagttttattcat
gatacagcaaaactcaatatcagcactggagcactcatttatggatgtgaattagtacag
aacaatattgtgattattgttgaatcgcaattatttggagaacagagtacaccacaaaga
cgtagttcacaaaaattggtcgatcctgatctgattattcgagatatggctgaattgcgt
atcggtgctcccgtggtgcatttgcaatttggtgttggacgttatcaagggttacagcat
attgaatccaatggaatggctagcgaatttttaatcctcgcttatgcaggtgaagacaaa
atttatgtaccagtgacctcacttcatctcattagccgttatactggtgtagatagtgag
catgcccccctacataaactcggaaccgatcaatggcaaaaggaaaagaaaaaagccgcc
gagaaaatccatgatgtggcgattgaattacttgacctctacgcgaaaagagaagcacaa
cccggatatcaatatcaagtcgatcacagtgactatgctaaatttgcaagtgcttttccc
tttaccgaaacgcctgatcaactcaacgcaattgaacaaattatcaaagatatggaatct
tcaaggcctatggatcgactcatttgtggcgatgtgggttttggtaaaactgaagtagcg
atgcgtgcggctttcgtggccgttcaaagcaataagcaagtgtgtatcttagtaccgacc
acacttttagcaggacaacattttgaatcatttagggatcggttcgctgactttcctatt
aatatcgagctgctttcacgtttccgatctaacaaagaaagtgaagcggtgcttgctgga
ttaaaatcgggtacagtagacatcgttatagggacacataaactatttcaaagcagtatc
gcttttaaaaacctgggacttctcattattgatgaagagcaccgttttggagtgaaacaa
aaagagcatatcaaagcgctacgtacccacgtggatattttatcgatgacagccacgcct
attcccaggacattgaatatggctatggcagggattcgtgatatttcattaatgaccacc
cctcctgcaaaacgtttggcgattaaaactttttggcaggaaaaaaaagatcctattgtt
cgagaagcgatattaagagaaatattaagaggcggccaagtatttttcttacataataat
gtagaaaccattgagcgcatctgtgaagacttgcaaactttagtccctgaagccaaaatt
cgtagtgctcatgggcaaatgcgtgaacgtgagttagaacgggtgatgtctgatttttat
catcatcgttttaatgttttagtatgtacaacgattattgaaacaggaatcgatattcct
acagcaaatacaattattattgatagagctgataaatttggccttgcacaacttcatcag
ttacggggacgtgtaggacgctctcaccatcaagcctatgcttatttgcttaccccaaat
gaaaagtccttaacgtctgatgccgtaaaacgtcttgaagcaattgtatctttagaagat
ctgggagcaggatttactttagcgactcatgatctggaaattcgtggcgcaggagagctt
ttaggtgaagaacaaagcggtaacatgcacgccataggatttaatttatttatggagatg
cttgatagagcagtaaatgatttgaaagcagggaaaacacctgaattatccgcccctatg
tatcagggaccagagatcgatttaaggattagcgcagtaattcctgatgagtacatttct
gacgtgcataatcgtcttatcatgtataaacgaatttcaaatgcaaaaaataatcagcaa
ttacacgagttacaaatcgaactcattgaccgatttggcttgttaccccaacaagtgaaa
catttattattgattactgaattaaaattaaaagcagaaaaaatgggtattcaaaaaatc
agtgctggcgcccagcaaggcaaaatagaatttggtgatgccccaactatcgacactggt
gttttaatcagtttgatacaagtacatgccaaaaggtataaaatggacgggcctcaatgt
ttacgttttaccctcgacagcacttctgctgaggaacgtctttttgaaattggttctttg
cttcataaattagcaggttcaaaagttcctatctcttaa
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