Legionella sainthelensi: CAB17_19860
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Entry
CAB17_19860 CDS
T05293
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lsh
Legionella sainthelensi
Pathway
lsh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CAB17_19860 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsh03400
]
CAB17_19860 (ligD)
Enzymes [BR:
lsh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CAB17_19860 (ligD)
DNA repair and recombination proteins [BR:
lsh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CAB17_19860 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AYK03136
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All DBs
Position
pLA01-117_113k:complement(58487..60997)
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AA seq
836 aa
AA seq
DB search
MSLGQYYKKRNFSKTPEPKGKVSKEHSRMFVIQKHAASHLHYDFRIELHGVLKSWAIPKG
PSLDPEVKRLAMQVEDHPIQYGSFEGIIPKGQYGGGTVMLWDKGSWEPLDENPYAAYEKG
HLRFLLHAEKLQGRWDLIRFKDEKHWFLIKHNDEFAKIQDEYDITEALDRSVLSNYNIDE
IATHYDRIWNSSGAQKVKSKRKTRTKKIPKTILTLPEGLIKSEYPDFIPPQLATLVDKPP
VGGQWLHEIKFDGYRILAYKNDSEVLLKSRNNLPWTSEFPSIVEAIGQLPFKQLILDGEI
VILDAKGRSDFQLLQNSLKSKKNASFDYFLFDLVYFEGYDLRKLSLLERKAILKNILEIN
IPLLHYSEHIIKEGKELYQYSCQHSLEGIISKKASATYISKRNKDWLKIKCIKRQEFIIG
GYSSPKGGRSHFGSLFLGVYNKEGTIDFIGNVGTGFTEKSLGEINKLLQENKCSKNPFNT
NPPGYTKAHWLKPTLVCEVEFTEWTKDDHIRHPSFKGLRLDKKATEVLREVEIPLEEVKK
KESTPQKTRSPFVITNPDKVLYPEDHITKKDLLAYYEAISDYILPYISLRPLTLVRCPSH
YNQCFYQRHFNSSTPDTLHPIEDPSDTEHERYIYLNNKEGLLSLIQMGVLEIHPWGSRID
HLDKPDILVIDLDPAPDVPWKKIVSAAKEIREHLTQYQLKSFVKSTGGKGLHVVIPILPE
YDWETIKEFTHVFVQFMEKLKPNDYISNMAKAKRTGKIFVDYLRNQRTATAIGAYSTRAR
HHAPVSAPLAWDELSDKMEDNSYTIKTLPNRLKQLKEDPWKDFWHIKQSLRLDQLE
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgagccttggtcagtattataaaaaaagaaatttttcaaaaacaccggagcccaaagga
aaagtcagtaaggaacactctcgtatgttcgttattcaaaaacatgcggccagtcatctt
cattacgattttcgcattgaactccatggagtcttaaaaagttgggctatacctaaaggc
ccctctttagaccccgaagtaaagcgtctagcaatgcaggtcgaagaccaccctattcaa
tatggaagctttgaaggaattattccgaaagggcaatatggcgggggtacggtcatgtta
tgggataaagggagttgggagcctttagatgaaaatccctacgccgcttatgaaaaagga
catttacgctttctgcttcatgcagaaaagcttcaaggcagatgggatctaattcgtttt
aaggatgagaaacattggtttttaattaagcataatgacgagtttgcaaaaatccaggat
gaatacgacattaccgaagctctggacagaagtgtcctatctaactacaacatagacgaa
atagccactcattatgaccgaatttggaatagcagtggagcgcaaaaagttaaatcaaaa
agaaaaactagaactaaaaaaataccaaaaacaatccttacgctgcccgaaggtttaatc
aaaagcgaatatcccgatttcatcccaccccagctcgccaccttagtggataagccaccg
gttggagggcaatggcttcatgaaataaaatttgatggctaccgtattttagcttataaa
aatgattccgaagttctgctaaaatcccgcaataatttgccctggacttcagaattcccc
tctattgttgaagccattggtcaattgcctttcaagcaattaattcttgatggtgaaatc
gttattttagatgccaaaggacgttctgattttcaattactgcaaaactctttgaaaagc
aaaaagaatgcttctttcgattattttctttttgatctggtctactttgaaggatatgac
ttaagaaaactctcgttgttagagcgtaaagccattttaaaaaatattctcgaaattaac
atcccattgcttcattacagcgaacacattattaaagaaggtaaagagctttatcaatat
tcttgtcagcattcgttagaaggaatcatttccaagaaagcatcggccacctacatttca
aaacgaaataaagactggttaaaaatcaaatgcatcaaacgccaagaatttattattggc
ggttactcctcccctaaaggaggtcgctctcatttcggctccctattcttaggtgtttat
aacaaagaagggaccattgattttatagggaatgtgggcacagggtttacagaaaaatca
ttaggggaaatcaataaacttcttcaagaaaataaatgctcaaaaaatcctttcaatacc
aaccctcctggttatactaaagcccactggcttaaacctactctagtttgtgaggtagaa
tttacagagtggacaaaagacgatcacattcgccaccccagttttaaaggattgcgttta
gataaaaaagcaaccgaggttctacgtgaagtggaaatacctctagaagaagtcaaaaag
aaagaatccacccctcaaaaaacacgctctccttttgtcattactaatccagataaagta
ctctatccagaagaccacattacgaaaaaagatttactggcttattatgaagctattagt
gattatattttgccttatatctcactaagacctttgactttagttcgttgtccttctcat
tacaatcaatgcttttatcaacgtcattttaattcctcaacacccgataccttgcatccc
atagaggaccccagcgataccgagcatgagcgttatatttaccttaacaacaaggaaggt
ttattgagcttgattcaaatgggtgttttagaaattcatccttggggtagccgtatcgat
cacttagataaacctgatattctggtcattgacttagaccctgcccctgatgtgccgtgg
aaaaaaatagtctctgcggccaaggaaattagagaacatttaactcaataccaattaaaa
tccttcgtcaaaagtaccggaggtaaaggacttcatgtcgtcattcccatacttcctgaa
tacgattgggaaacaattaaagagttcactcacgttttcgtacaatttatggaaaaatta
aaacccaacgattacatcagtaatatggccaaggcgaaaagaactgggaaaatatttgtt
gattatttacgaaatcaaagaactgctacagcaataggcgcttattccactcgcgcaaga
caccatgcaccggtttctgctcctttagcttgggatgagttaagcgacaaaatggaagac
aatagctataccataaaaacccttcctaatcgtcttaaacaattaaaagaagacccatgg
aaggatttttggcatattaaacagtctttgcgcttagaccaattggaataa
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