KEGG   Leptidea sinapis (Wood White): 126969790
Entry
126969790         CDS       T09272                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
lsin  Leptidea sinapis (Wood White)
Pathway
lsin03030  DNA replication
lsin03410  Base excision repair
lsin03420  Nucleotide excision repair
lsin03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lsin00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    126969790
   03410 Base excision repair
    126969790
   03420 Nucleotide excision repair
    126969790
   03430 Mismatch repair
    126969790
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lsin03032]
    126969790
   03400 DNA repair and recombination proteins [BR:lsin03400]
    126969790
Enzymes [BR:lsin01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     126969790
    6.5.1.6  DNA ligase (ATP or NAD+)
     126969790
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     126969790
DNA replication proteins [BR:lsin03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    126969790
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     126969790
DNA repair and recombination proteins [BR:lsin03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     126969790
   NER (nucleotide excision repair)
    Other NER factors
     126969790
   MMR (mismatch excision repair)
    Other MMR factors
     126969790
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 126969790
NCBI-ProteinID: XP_050671310
EnsemblRapid: ENSLSNG00005011336
LinkDB
Position
19:7486733..7517354
AA seq 904 aa
MNLYTLTRISRCLFTTAYLSRNKLTIYTPLIIRVSNKTTSLGSPIFCVRKMSQTSIRAFF
SATPKRSEKKTNDMDEKAQTNEAISNGKDETPPSNAKRKTSKRTRSQSSENESSPINSPV
IEKKKLKRQRIESSDSETESSPNCQDNLRSDKPLRTYESPKNLFQKIEKPLNGNKIKTSN
KIKSENSTLKIENSKELSPKKTEKKSPITSKKVKEEKLTPVKTDIKENGVKEEKSDAAQV
VAETDYNPAKTRYHPVNDACWTKGQDIPYLALAKTLEAIEATSSRLKMIDILSNYLRSVI
ALTPEDLLPSIYMCLNQLGPAYQGLELGMAETYIMKAVGQCTGRTVAQLRAAARSEGDLG
IVAERARASQRTMMRPAPLRLRNVHAALRQVANMTGQASVNKKISKIQSLYVACRQSEAR
YLIRSLEGKLRIGLAELSVLQALGAACAATPPAGRHAGELDVSGLLNQQQYKARVDECAL
TIKTTYCECPNYDLIVPALLTHGVEALPQHCRLTPGVPLKPMLAHPTKGVHELFTRFVGE
PFTCEWKYDGERAQLHVPGHERAELARAAIFSRNQENNTSKYPDVIGRLESLLKPSVRSC
VLDCEAVAYDTSTQQILPFQILSTRKRKDASTKDIKVQVCMFVFDLLYLNGEALVRRPLL
ERRQLLREHFNTVLGEWEFARGQDCSTGEEVEAELQDAIRGSCEGLMVKALSGARAHYDI
ATRSHNWLKLKKDYLEGCGDSIDAVVIGGYLGRGRRSGVYGGFLLACYDPDTDSYQSLCK
IGTGFSDNDLATLSEDLNKDLIDAPRNYYRFESSLKPDAWFSARCVWEVKCADLSLSPAH
HAALGLVDAHKGISLRFPRFIRVRDDKSPEQATSARQISQLYLAQDQVKNSAQSAASDEP
LDFY
NT seq 2715 nt   +upstreamnt  +downstreamnt
atgaatttatacacgttgacgagaataagtagatgcctttttactactgcttatttatca
cgaaataaacttactatttatactccccttatcataagagtttcaaacaaaaccacatct
ttgggaagccctatattttgtgttaggaaaatgtctcagacgagtattagagcttttttc
agtgctactccaaaaagaagtgaaaagaaaacaaatgatatggatgaaaaagcacagact
aatgaagcaattagtaatggaaaagatgagacacctccatcaaatgcaaaaaggaaaaca
tcaaagcgaacacggtcacagagtagtgaaaatgagtcaagtccaataaattcacctgtt
atagaaaagaaaaaattaaaacggcagcgaattgaaagttctgatagtgaaacagaaagc
tcaccaaattgtcaggataacctaaggtcagataagcctttaaggacatatgagtcaccg
aaaaatctttttcaaaaaatcgaaaagcctttaaatggaaataaaataaaaacatccaac
aaaattaaatctgagaatagtacattaaaaattgaaaattcaaaagaactttctccaaag
aaaactgaaaagaagagtccaataacttccaagaaggtaaaagaagaaaagctaacacca
gttaagactgacataaaggagaacggtgtgaaagaggagaagagtgatgcagctcaagtt
gttgcagaaacagattacaatcctgctaaaacacgataccacccagtgaatgatgcatgc
tggactaaaggacaggacattccatacttagcactagcaaagactctggaagctattgag
gctacatcctctcgtctcaagatgattgatatactgagcaattacttgaggtctgtaata
gcattgacaccggaagacctactgccgagtatatacatgtgcttgaatcagttggggccg
gcctaccagggcttagaacttggcatggcggagacgtacataatgaaagcggtggggcag
tgcactgggcgcacggtggcgcagctgcgggccgcggcgcgcagtgagggcgacctgggc
atcgtggcggagcgcgcgcgcgcttcccagcggaccatgatgcgccccgcgcctctgcgc
ctgcgcaacgtgcacgccgctctgcgccaggtcgccaatatgacgggacaggcatctgtc
aacaagaagatatccaagatacagtctctgtacgtggcctgcaggcagtctgaggcgcgg
tatctgatcagatcgctcgaaggtaagttgcgcatcggtctggcggagctgtccgtgcta
caggcgctgggagctgcgtgcgcggccacgccccccgcaggccgacacgccggggagctg
gatgtcagcgggctgctcaaccagcaacagtacaaggctcgcgtagatgaatgcgcgctc
acaataaagacgacgtactgcgagtgccccaactacgacctgatagtgccggcgctgctc
acccacggcgtggaggccctgccgcaacactgccgcctcacacccggggtgcctctcaag
ccaatgttggcgcaccccactaagggggtgcacgaactgttcaccaggttcgtgggcgag
ccgttcacgtgcgagtggaagtacgacggcgaacgtgcgcagctccacgtgcccggccac
gagcgagccgaactggcgcgtgctgccatcttcagccgcaaccaggagaacaacaccagc
aagtaccccgacgtgatagggcggctggaatcactactaaagccatcggtgcgcagctgt
gtgttggactgtgaggcggtcgcctacgacaccagcacgcagcagatacttcccttccag
atcctgtcgacccgcaaacgcaaagacgcgtcgacaaaggacatcaaggtgcaggtgtgc
atgtttgtattcgacctgctgtacctcaacggagaggctctcgtgcggcgcccgctgctg
gagcggcgccagttgctgcgggagcacttcaacactgtgctaggtgaatgggagtttgcg
cgaggccaggattgcagcactggcgaagaggtggaagcggagctgcaggatgccatccgc
ggctcgtgcgaggggctcatggtgaaggcgttgtcgggagcccgagcgcactacgacatc
gcgaccaggtcgcacaactggctcaagttgaagaaagactacctggaggggtgtggcgac
agcatcgacgcggtagtgatcggcgggtacctggggcgcgggcgccgctccggtgtgtac
ggcggcttcctgctggcgtgttacgaccccgataccgacagttaccagtcgctctgcaag
atcggcaccggcttttccgacaatgacctggccacgctcagtgaggacctcaataaggat
ctcattgacgccccccggaactactataggttcgagtcgagcctgaagccggacgcgtgg
ttctcggcgcggtgcgtgtgggaggtgaagtgtgcggacctgtcgctgtcgcccgcacac
cacgccgcgcttggcctggtggacgcgcacaagggcatctcgctgcgattcccaaggttt
atccgcgtgcgcgatgacaagagcccggagcaggccacgagcgcgcgtcagatctcgcag
ctgtacctggcgcaggaccaagtgaagaactccgcgcagtccgccgccagcgacgaaccg
ctcgacttctattag

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