Leptidea sinapis (Wood White): 126970078
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Entry
126970078 CDS
T09272
Name
(RefSeq) serine/threonine-protein kinase pakD isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
lsin
Leptidea sinapis (Wood White)
Pathway
lsin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126970078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lsin03000
]
126970078
03019 Messenger RNA biogenesis [BR:
lsin03019
]
126970078
04121 Ubiquitin system [BR:
lsin04121
]
126970078
Enzymes [BR:
lsin01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
126970078
Transcription factors [BR:
lsin03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
126970078
Messenger RNA biogenesis [BR:
lsin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
126970078
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
126970078
Ubiquitin system [BR:
lsin04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
126970078
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-RING_2
zf-C3HC4
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
126970078
NCBI-ProteinID:
XP_050671718
EnsemblRapid:
ENSLSNG00005022317
LinkDB
All DBs
Position
20:13551094..13607336
Genome browser
AA seq
1044 aa
AA seq
DB search
MSVLNQSGEEQVECPLCMEPLEVDDLHFYPCTCGYQICRFCWNRIREGENGLCPACRKAY
PENPADFTPLSQEQVAAIKTEKKAREQKRRNKTLESRRALANVRVVQNNLVFVVGLPVRL
ADPEILKRQEYFGKYGKIHKVVINQSPAYAGSQQCVRQSPSASAYVTYVSSADALRAIQA
VNNVTLDGRVLKGSLGTTKYCANFMKNQPCPKADCMYLHELGDPKASFTKEEMHAGLHQV
YERRLHQQLINSTKDRIGTDDKLGSSSSSNTEKSSSKDGSQSNFIPTTIVTASQINSVST
SKSKRDSVNGITNGSSNSNGNGKEAWPSLGSSPPNDSPARKHNTASPKPHNSSVKSQENG
TSEPSSPTNVHSQPQPQCKDHHTDKASRKDTNDQKKNKSDKAKQKISTDEEDIETFEMDT
QYLTNELDELESDRHSLLENHDLLNNSDHSLLDDDNSHDLLNDVNNEVLMMQRHREMLAG
LVENNITPHNMKSSLTNGYGLLDRETMSYLGNDRQSNQMNQTMMDQKDIIQSQMLQRQNE
LLARQQSVMEPKHYLQSSVALESASELLGANYHPNVNILPPFGMRVDNLMTSNSMGNTIS
GNSLANSLSTNSLSSNPLSPSPLSANPLSPNPLPSNTLSLNSLGANSLSNNMVNPLGPNA
MVANSIQVNNMSVNTLGGNLGANNLNSYILHNHQLHMQNQQMQNQQMQTQQIQNQQMQNQ
QMQNHQMQSQQMQNQQMQSQQIQNHQMQSQQMQNHQMQSHQMQNHRMQNHQLQNHQMQNQ
QMHSQQIQNQQMQSQHIKNHQLQNQQMHGALMNGFDSPHSISEGRYQADNMEKFFTDFHK
AQQMRMVSRSLASNVSERGRYPHNMLSAERLEMEHKQRMNSMRVSEMPSGRAAGDADDDL
DFDPFKETQKALAEMMETEMMLNNISSGDNVRPRPPPPGFSHATLYQRQQPQQQDWTQMD
PAIMSTSVNFGKNPAAINHQEIFTRFNQLHIQPNGVKLQLPPAPQWAAPHKVTWGAAPYN
SIPMPPGFSPQKPPQHPAECIDAK
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtactgaatcagagtggagaagaacaggtggaatgtcctctgtgtatggaaccc
ttggaggtggacgaccttcatttctatccgtgcacatgtggttatcagatatgccggttc
tgttggaaccgaatccgggaaggagagaacggcctgtgtccggcatgtcggaaggcctac
ccggagaaccccgcagacttcactccactcagtcaggaacaggtggccgccataaagacg
gagaagaaggctcgcgagcagaagcgacgcaacaagacgctggagtcgcggcgagcgctc
gcgaacgttcgtgtcgtgcagaacaacctggtgttcgtggtgggactaccggtcagactg
gcagaccccgagatcctaaaacggcaagaatacttcggcaaatatggaaagattcacaaa
gtagttataaaccaaagtccagcatatgcaggctcacagcagtgcgtccgacagagtccg
tcggcgtccgcctacgtcacgtacgtgtcgtcggcggacgctctgcgcgcgatccaggcc
gtcaacaacgtgacgttggacggccgcgtgctcaagggctcgctgggcaccaccaagtac
tgcgccaacttcatgaagaaccagccctgtcccaaggccgactgcatgtatctacacgag
ctgggtgatccaaaagcatcgtttactaaggaggaaatgcacgcgggcctgcaccaggtg
tatgagagacggctgcaccaacagttgatcaactctaccaaagatcgcatcggcacagat
gacaaactcgggagttcgtctagttcaaatacagagaagagtagttctaaagatggtagt
cagtctaatttcatcccgacaacaatagttacggcgtcacaaataaattcagtcagcaca
tccaaatcaaaacgggattcagtgaatggcatcacgaacgggagcagcaatagcaatggt
aatggcaaagaagcttggcctagtcttggctcttcaccacccaatgacagtccagcaagg
aaacacaacacagccagccccaaaccacacaactcttcagttaagtcacaagaaaacgga
acttcagaaccctcgagccccactaatgtacacagtcagccgcagccgcaatgtaaagat
catcacacagacaaagccagcagaaaggacacaaatgatcagaaaaagaacaaatcggat
aaagccaaacaaaagatctccactgatgaagaagatatcgagacatttgaaatggacacg
cagtaccttacgaatgaattagacgaattagagtcagatagacatagcttgttggagaac
cacgatttgttaaataatagtgatcacagtttgttagatgacgataactcacatgattta
ctgaacgatgttaataatgaagtgctgatgatgcagaggcatagagaaatgttggctggt
ctggttgaaaacaatataacaccacataatatgaagagctcactaacaaacggatatgga
ctgttagaccgggaaactatgagttatttaggtaatgatagacaaagtaatcagatgaac
cagactatgatggatcagaaggacataatacagtcccagatgttacagaggcagaacgaa
ctattagcccggcaacagagtgttatggagccaaaacattatctacagtccagtgtagct
ttagaatccgctagtgaattattaggtgctaattatcaccccaatgtcaatatactccca
ccattcggcatgcgggtagacaatctaatgacttcaaattctatggggaatacaatttcg
ggcaactcgttggctaactcactatcaacaaactctttatcttcaaatccactatctcca
agcccattatccgcaaatcctctatctccaaatccgttaccttcaaatactttatctctt
aactccttaggtgcaaattctctgtcaaataatatggtaaatccgttagggccaaacgcg
atggtagctaattctatacaagttaataatatgtcagtaaatacattgggcggcaattta
ggagcaaacaatttgaacagctacatactacacaatcatcagttacacatgcagaatcaa
cagatgcagaatcaacaaatgcaaacccaacagatccaaaatcaacaaatgcaaaaccaa
cagatgcaaaatcaccagatgcaaagccaacaaatgcaaaaccaacagatgcaaagtcaa
cagattcagaatcaccagatgcaaagtcaacagatgcagaatcaccagatgcaaagtcac
cagatgcaaaatcatcggatgcaaaatcatcagttgcaaaatcaccagatgcaaaaccaa
cagatgcatagtcaacagatacaaaatcaacagatgcaaagtcaacatataaagaatcat
caattgcaaaatcaacaaatgcatggcgcactcatgaatggattcgattcaccgcattca
attagtgaaggtcggtaccaagcggataacatggagaagttcttcacggacttccacaag
gcgcagcaaatgcggatggtgtcccggagtctggccagcaatgtgtctgagcgcgggcgg
taccctcacaacatgctgagcgcggaacgactagagatggagcacaaacagagaatgaac
agtatgcgtgtctcggagatgccgagcggtcgcgccgcgggcgatgccgacgacgacctg
gactttgacccgttcaaagagacccagaaggcgctcgccgagatgatggagacagagatg
atgctgaacaatatctccagcggtgacaacgtccgtccccgaccgcctcctccagggttc
agccacgccactctgtatcagcggcaacagccacagcaacaagactggacgcaaatggac
cccgcaataatgtcgacatctgtcaacttcggcaagaatccagcagccatcaaccaccaa
gagatattcacaagattcaaccagctgcacatccagcccaacggcgtgaagctgcagctg
ccgcccgcgccgcagtgggctgcgccccacaaggtgacctggggggcggcgccctacaac
tccatccccatgccgccgggcttctctccacagaagcccccccaacaccccgccgaatgt
atcgacgccaagtaa
DBGET
integrated database retrieval system
