Leptidea sinapis (Wood White): 126975339
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Entry
126975339 CDS
T09272
Name
(RefSeq) endoribonuclease Dicer-like
Organism
lsin
Leptidea sinapis (Wood White)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
Dicer_platform
Dicer_dsRBD
dsrm
RQC
Invasin_D4
Motif
Other DBs
NCBI-GeneID:
126975339
NCBI-ProteinID:
XP_050679142
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Position
35:5223225..5289386
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AA seq
1341 aa
AA seq
DB search
MSNHQGYAKIIRHSSEKILNLINILKQYDPNVYEKSTASLEVNHARKPLSCIIFTQERFT
AKIIYNILKAAKETNPEEFAFLQHDFIVGFNINPYNNTREQHYTKKQSHMALERFRNGEL
NCLISTRILEEGVDIPQCLLVVRYDLPTEYRSYIQSKGRGRSKDASYVLLVLNDPEIRSK
FMSKYQTFIEIESKLRQLLVGKSLERIAPTAEDIKTSLYEEDEIPPYINPHNGNRLFSSA
AISLLCRYCSVLPHDQFTTIAPMWVLETDYEKNKHIITIFMPLACPIKTPIRSDPFVNKK
TARRSAALKACVLLHQIGELDEQTMLPKEYGKVDYDSLNIKDCFPNWPEEDDVKLNKNAP
YPGTKARVRKHKKIYSKYLQSIPSFESKKFYLHIIKLDVAFPKPQESREAALYELLGSGH
GYGLLTINPLPNLCQFSMFLTVGEVNTSLKMNYAVITLSSELFRIIKRYHFFVFDQVLEI
AKQFLVYDGTTNGLYVVPIVTSDHISYEINWGAMDYKEIQPIYVPSDTERKSLKVDQKTY
KHSVVTPWYRATSFPDRYIVSNVLEYMTPDSPFDLSSMGSYADYYSTKYNLDIQGPRDQP
MLEVRNISSRMNCLQPRAATLTGLTDKQQRLISNAQGDDKINKFKEIFVPEFCNHYEYPG
VLWYKAIMLPSIIHRVTMLLVAYELREEITEGTKYGQKHLNKGEEWLPLTANLKKAKQSL
LSQVEEPAPIMNIDRINNPVDDRVARPSKLSMKDIVKELNKKKMNQDYNWDELEEPIDID
RNIEIVTVMDVECYDTFNTLVISDKKSDPQAKVQSPTKSHVSLLSAIMPPPDLQMGEIRL
LSRKATGRGPELRDILTSITTINSHDTFDLERNETLGDSFLKFASTLYLFHKFSELDEGK
LTNIKGRLIGNRNLYYAGEKIRLGGRMKVEHFSPRSDFVVPGFLAPKLLIDFIEDKKIRP
TFLIGIQFSTQESLSGELTKESITMLQQRFNDLNNIAEPEPEGRAQNIMQGYVLSQAVSD
KSVADCVESLIGTYLLSGGIEAAVKVLEWMNVIPAKDNFMSYLTKRVPSVLDKVSVEEIN
RVLNNTRDDVEKIINYKFKDPSLLLEALSHPSYIRNRYTGSYERLEFLGDAILDFLITSH
IFENFGDMTPGDLTDLRSALVNNVTFAAYVVKLNLHKFLCYDMNPALCNAIIAFAEHQEQ
RQHDIIGDVQYSIDEEECQIAEYVDVPKTLSDVFESLTGAIYLDSGGDLSAVWQVVYRIM
WKEINSFSTNIPKQPVRVLYEEKFACPVFGEAKLLETNISRVMMPVTFTKSGRRHSVYGV
GHNKSQAKRAAAKLALKILAV
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatcaccaaggatacgcgaaaataataagacattcctctgaaaaaatattgaat
ctgataaacatccttaagcaatacgatccaaatgtctatgaaaaatctacagcatcgctt
gaagtaaaccatgccaggaaaccgttgtcatgtataatattcactcaggagagattcact
gcgaagattatatacaatatcttaaaagctgctaaagaaacgaatcccgaagagtttgca
tttctccaacacgacttcatagtaggattcaatatcaatccatataataacaccagggaa
cagcattatacaaaaaagcaaagccatatggctctggaacgattcagaaatggagagtta
aattgcttgatatcaactcggatattggaggaaggggttgatataccacaatgcctgctt
gtggttagatacgatttgccaacagagtatagatcttatatacaaagtaaaggtcgcggt
agaagcaaagacgcgtcatatgtattattagtattgaacgatccggagatacgatcaaaa
tttatgagtaaataccaaacatttattgaaattgaaagtaaattgcgtcagctgttggta
ggcaaatctttggaacgtattgcgcctactgcagaggatattaagacttcattgtatgaa
gaggacgagataccgccttacattaatccgcataatggaaatcgtctcttttcatcagca
gcaattagtttactgtgtcggtattgctcagtgttgccacacgatcaatttaccactatc
gcgccgatgtgggttctagagacggattatgaaaagaacaaacatatcataaccatcttt
atgcctttggcttgtcctattaaaacaccaatcaggagtgatccttttgtaaataagaag
actgctagaagatcggccgcgctaaaagcttgtgtcctgttgcaccaaatcggcgaatta
gatgagcaaacgatgttgcccaaggaatatggaaaagtagattacgatagtttgaatata
aaagattgtttccccaactggccggaggaggatgatgtgaaactgaataaaaatgcgccc
tacccaggcacaaaagcccgagttaggaagcataaaaaaatttattcaaagtatctgcag
agtatcccgtcattcgaatcaaaaaagttttatttgcatatcatcaaattggacgtcgca
tttcccaagccgcaagaatcgcgagaggcggcgttgtatgaactacttggaagtgggcat
ggctacgggctgttgactataaatccgttgccgaacctatgtcagttttcaatgtttctg
actgtcggagaagtgaatacatctttgaaaatgaattatgcggtcatcacgctaagttcg
gagctgttcagaataattaaacggtaccattttttcgttttcgaccaagtgttggaaata
gctaaacagtttcttgtatatgacggaaccaccaatggcttgtacgtggttcccatagtc
actagtgatcatatttcctatgaaatcaactggggagctatggattataaagaaatacaa
cctatttatgtgccctctgacactgaaagaaaatccttaaaagtggaccagaagacgtac
aaacattcagttgtaacaccttggtaccgggcaactagcttcccagacaggtatattgtc
tcaaatgtcttagaatatatgacaccagattctccgtttgatttatcttctatgggctcg
tatgcggactattatagtaccaaatataatttagatatacaaggaccaagagatcaacca
atgcttgaggtgagaaacatcagtagtcgcatgaactgtcttcagcccagagcagcgaca
cttacaggattaacagacaagcaacagagactgatatccaatgctcagggtgatgataaa
attaacaaattcaaggagatattcgttccggagttttgtaatcactacgagtacccagga
gtattgtggtataaggccataatgctccccagcattattcacagagtgacaatgctgtta
gttgcttacgagcttcgtgaagaaataactgaaggtactaaatatggccagaaacatctg
aataaaggcgaggagtggttgccgctaacagcaaatttgaaaaaagcaaaacagtcattg
ctgtctcaagtagaggaaccagccccaatcatgaatatcgacagaatcaacaaccctgtg
gacgatagggttgccagaccgtcgaaactctctatgaaagatattgttaaagagctcaat
aaaaagaaaatgaaccaggactataactgggatgaactggaagagcctatagacatagac
cgtaacatagaaatcgtgacagtgatggatgtggaatgctacgacactttcaacacctta
gttatttcggataagaagagtgacccgcaagccaaagtacagtccccaactaaatcacat
gtatcactgctttcagcgatcatgccgccgccagatctacaaatgggtgagatacgattg
ctatctcggaaggcgacgggccgcggtccagagctacgagatatattgacatcgatcaca
acaatcaattctcacgacaccttcgatttggagcgaaatgaaacacttggggattcattc
ctcaagtttgcgtctactttgtatctgtttcataagtttagcgaacttgacgaaggaaag
ctgaccaatataaagggaagactcattggaaataggaacctttactacgcgggtgagaag
ataagactaggagggcgtatgaaagttgagcatttcagtccacgcagtgatttcgttgtt
cctggatttctagcaccgaaattgcttatagactttattgaagataaaaagataaggcct
acgtttttgatcggcatccagttcagtacgcaagagtccctgagcggagaactaacaaag
gaaagtataacgatgctgcagcagaggtttaatgacctgaataacattgctgagccagaa
ccggaaggcagggcacagaacatcatgcagggatatgtgttatcgcaggccgtttctgat
aagtcggttgctgattgtgtggagtccctaataggaacataccttctaagcgggggcatt
gaagcggccgtcaaagtcctggaatggatgaacgtgatcccggcaaaggacaacttcatg
agttatctgacgaaacgggtgccaagtgtgttagataaagtatctgtggaagaaattaat
cgagtgcttaacaataccagagatgacgtcgagaagatcattaactataaatttaaggat
ccatctttattgctcgaggcattgtcgcatccgtcgtatatacggaacagatacacgggt
tcgtacgagcggctagaatttctgggcgacgcgatattggactttttgattacttcgcac
atattcgagaatttcggcgacatgactccgggcgatttgaccgatttgaggtcggcccta
gtcaataatgttacattcgccgcttatgttgtgaaactcaacttacacaagttcctatgc
tacgacatgaacccagcgctctgtaacgcgataatcgcattcgctgaacaccaggagcag
agacaacacgatatcatcggcgacgtacaatattcgatagacgaagaagaatgtcagatt
gctgagtacgtcgatgtgcccaagaccctaagtgacgtatttgagtcgctcactggcgct
atatacttggacagcggcggtgacttgagcgcagtatggcaagtcgtgtaccgtattatg
tggaaagaaatcaattcattctcgacgaacattcccaaacaacctgtcagggtgctctac
gaagagaagttcgcctgtcccgtttttggggaagctaaattgttagaaacaaacatttcg
agagtgatgatgcccgtaacgttcactaaaagtggtcgcaggcactcggtctacggagtt
gggcacaacaagagtcaagcgaaacgagcagctgccaaattagcacttaaaatactcgct
gtttaa
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