Leptidea sinapis (Wood White): 126976575
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Entry
126976575 CDS
T09272
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
lsin
Leptidea sinapis (Wood White)
Pathway
lsin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126976575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsin03041
]
126976575
Enzymes [BR:
lsin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126976575
Spliceosome [BR:
lsin03041
]
Complex C
Other components
Step II factors
126976575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
AAA_22
DEAD
AAA_19
nSTAND3
T2SSE
Microtub_bd
Flavi_DEAD
DinB
AAA_33
AAA_30
SRP54
Sigma54_activat
PhoH
cobW
ABC_tran
ATPase
Motif
Other DBs
NCBI-GeneID:
126976575
NCBI-ProteinID:
XP_050680920
EnsemblRapid:
ENSLSNG00005018257
LinkDB
All DBs
Position
41:4363353..4458566
Genome browser
AA seq
1178 aa
AA seq
DB search
MEETDENLHRLEGTSGDALGGLIIKKRENPAEFQFAKPSLLGLDKLAATKRKQNRLISFQ
TETYEADDVGENSYNTAQKERKYRRHNEETPTYTGGLSEEARKRMLERMQKKEKIKEKGV
HNSTDEEKKSRSDDDAYIEKYRRRDKDRRYDKRDRDRRDRDRKSDENDRDRSDRRTDRDS
SRRSYYEPRFKDEPRTPSIKALKPTDKTAWDDDDEDPKAMRKSSWDFPTPKPRETGDRSD
RSDRKPSRDYKGRLYEDTPRATPHKWVSSRRGLDVDDPEWQEAEKKLDRAWYNMGEGETD
ESDPFAGTSSEYIAKKEEQIEKKRNRKVSAARQQIDKDNELWERNRMLTSGVVHSINVNN
DLDEESVDRVHLLVHNIVPPFLDGRIVFTKQPEPVIPVKDPTSDMALNARKGSALVKAFR
EQKERRKAQKKHWKLEGTKIGNIMGVQKEQEELEDGPTKQAYKYAEHLDNETEPESKSDF
VKKKSITEQRRFLPVFAAREELMQVIRENSVIIIVGETGSGKTTQLTQYLHEDGYSRLGT
IGCTQPRRVAAMSVAKRVADEMGVRLGEDVGYAIRFEDCTSPQTVIKYMTDGILLREGLR
EPDLDNYCAIIMDEAHERSLSTDMLFGLLREVVARRTDLKLIVTSATMDSSKFATFFGNV
PTFTIPGRTFPVETFYAKNVCEDYVDGAVKQALQIHLQPDDGDILIFMPGQEDIEVTCEV
LTERLGDLDTAPPLTVLPIYSQLPADLQAKIFQRAPPGQRKCIVATNIAETSLTVDGIMY
VIDCGYCKLKVYNPRIGMDALQIYPVSQANARQRAGRAGRTGPGKAFCLYTQRQFLHELL
PATVPEIQRTNLANTVLLLKSLGVEDLLAFHFMDPPPQDTILNSMYQLWILGALDGTGAL
TPLGRQMAEFPLDPPQCHMLIVSAEMGCSAEVLIIVSMLSVPSVFYRPQGREEESDAVKE
KFQVPESDHLTLLHLYNQWKSNKYSSSWCTEHFVHAKAMRKVREVRQQLKDIMQQQRLPL
VSCGTEWDTVRKCICSAYFQQAARLKGIGEYVNCRTGMPCHLHPTSALFGLGSSPDYVVY
HELMMTSKEYMHCVTAVDGRWLAELGPMFFSVKETGKTNRDKRKEAAVHLQRMEDEMKVA
EQKMAEEKKRKDQDVPVKQEIATPGLSTPVRTPHRLGL
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atggaggagactgatgaaaatctacatcgattagaaggcacttcaggcgatgctcttgga
ggattaataattaagaaaagggagaatccagctgagtttcaattcgctaagccttcatta
ttaggcttagacaagttagcggcgactaaacgaaagcaaaatcgactaatttcatttcaa
acagagacttacgaagccgatgatgtaggggaaaatagctataatactgctcaaaaagaa
cgtaaatatcgacggcacaatgaagaaacaccgacctataccggtgggctctctgaagaa
gctagaaaacgtatgcttgaacggatgcaaaagaaagaaaaaataaaagaaaaaggtgtg
cataattctacagatgaagagaaaaaatccagatctgatgatgatgcctatatcgagaaa
tacagaaggcgtgataaggacaggagatatgacaaaagagatagagatagacgagataga
gacagaaaatctgatgagaatgatagagacagaagcgataggagaactgaccgggacagt
tctaggagaagttactatgaacctcgtttcaaggatgagccaaggactccaagcatcaaa
gctttaaaacctactgacaagacagcatgggatgatgatgatgaggatccaaaagctatg
cgaaaatcaagttgggatttccccacaccaaagccaagagaaactggtgatcgttctgat
cgtagtgatagaaaaccatctagagattataagggaaggttatatgaagatactccgaga
gccacacctcataaatgggtcagttctagacgtggcttagatgttgacgatcctgaatgg
caggaagcggagaagaaattagatagagcttggtataatatgggtgaaggtgaaacagat
gagtcggatccatttgctggcacctcatcagagtacatagcaaagaaggaagagcaaata
gagaagaagagaaacaggaaggtctcagctgcaagacagcagatagataaggacaatgag
ctgtgggagaggaacagaatgcttacgagtggtgtcgtgcattctatcaatgttaacaat
gatctggatgaggaaagcgtagaccgcgtacacttgcttgtacacaatatagtgccaccg
ttcctggatggacgcatcgtatttacaaagcaaccagagcctgtcataccggtgaaagac
cccacatctgacatggccttaaacgcacgcaaaggatctgcgttggtaaaggcattccga
gaacagaaggagaggaggaaggcgcagaagaaacattggaagttggagggaacaaaaata
ggtaatatcatgggtgtgcagaaggagcaggaggagctagaagatggacccacgaagcaa
gcctacaaatatgctgaacacttagataatgaaaccgaaccggagtcaaaatctgatttc
gtgaagaagaagtcgataacggagcagcgcaggttcctgcctgtgtttgcggcgagggag
gaactgatgcaggtcatcagggagaacagcgtcatcattattgttggtgagacgggcagc
gggaagaccacccaactgacgcagtatcttcacgaggacgggtacagccgcctgggcacc
atcgggtgcacgcagccgcgtcgtgtggccgccatgtcggtggccaagcgggtcgcggac
gagatgggcgtccgacttggcgaggatgtcgggtacgcaattcgttttgaggactgcaca
tcgccgcagaccgtgatcaagtacatgactgacgggatcctgctccgcgagggtctgcga
gagcccgacctggacaactactgcgccatcatcatggacgaagctcacgagcgctcccta
tccactgatatgctgtttggtctgctcagagaggtggtggcccggcgaaccgacttaaag
ctgatcgtgacctcggccacgatggactcttcgaagttcgctacgttcttcggtaatgtg
cccaccttcaccatccccgggcgcaccttccctgtcgagacattctacgccaaaaacgtc
tgcgaagactatgtcgatggtgctgtcaaacaggctctgcagatacacttgcaaccggat
gatggagatattttgatattcatgcctggtcaagaagacattgaagtaacttgtgaggta
ttgacagagcggcttggagacttggacacggcgcccccgctgactgttttgccgatatat
tcacaactacccgcggatctgcaagcgaagatattccaacgtgcaccgcccggccaacgg
aagtgcattgtggccactaacattgcagaaacatcgctgactgtggacggcatcatgtac
gttatagactgtggctactgcaagctgaaggtctacaacccaaggatcggaatggacgct
ctgcagatatacccagtgagccaggccaacgcccggcagcgagccggtcgagccgggcgg
acaggtccgggcaaggcattctgtctgtacacccagcgccagttcctccacgagctgctg
ccagccaccgtacccgagatccagcgcaccaacctggctaacacggtcctgctgctcaag
tccttgggcgtcgaggaccttttggcgttccacttcatggatccgccgccccaagatact
atcctaaactctatgtatcaactgtggatcctgggcgctctcgacggcactggagccttg
acacccctgggccgccagatggcagaattcccactggacccccctcagtgccacatgctc
atcgtatctgcggagatgggctgcagcgctgaagtgctcattatcgtgtcaatgctgtcg
gtgccctcggtgttttaccgcccccagggtcgtgaggaggagtcagatgctgtcaaggag
aagttccaggtgccggagtcggaccaccttaccttgctacatttatacaaccagtggaag
agcaataagtattcaagttcttggtgcacagaacacttcgtgcacgcgaaggcgatgcgc
aaagtgcgtgaagtgaggcagcagctcaaggacatcatgcagcaacagcggctgccgctt
gtgtcctgcggcactgaatgggacaccgtgcgcaagtgtatctgctccgcgtacttccaa
caagcggctcgtctgaagggcatcggcgagtacgtgaactgccgcacgggcatgccgtgt
cacctgcaccccacgtcggcgctgttcggactgggctcctcaccagactacgtggtctac
cacgagctcatgatgaccagcaaggagtacatgcactgcgtcaccgccgtcgacggtcgc
tggcttgccgaactgggacccatgttcttctccgtcaaggagactggcaaaacaaaccgc
gacaaacgtaaagaagccgctgtccacttgcagcgaatggaagatgagatgaaagtggca
gaacagaagatggcggaagagaagaaaaggaaggaccaggatgttcccgtcaagcaagaa
atagcgaccccgggactgtctacacccgtccggactccgcatagactggggctgtga
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integrated database retrieval system
