Ligilactobacillus salivarius JCM1046: LSJ_0329
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Entry
LSJ_0329 CDS
T03340
Symbol
rho
Name
(GenBank) Transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
lsj
Ligilactobacillus salivarius JCM1046
Pathway
lsj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LSJ_0329 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsj03021
]
LSJ_0329 (rho)
03019 Messenger RNA biogenesis [BR:
lsj03019
]
LSJ_0329 (rho)
Transcription machinery [BR:
lsj03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LSJ_0329 (rho)
Messenger RNA biogenesis [BR:
lsj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LSJ_0329 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA
Motif
Other DBs
NCBI-ProteinID:
AIR10070
UniProt:
A0A089QBD3
LinkDB
All DBs
Position
358386..359669
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AA seq
427 aa
AA seq
DB search
MATSENKDIKELTIAELENMTLKEIYNYARIYKIPYYSKMNKKELSLAVIRAQANKNGFY
MKGILEIVPNQDGYGFLRPINYGPSQEDIYISASQIRRFGLRNGDEVAGTARPPRQGEKF
YGILHVDSVNNKDPEEAKKRDHFPALTPIYPDKQIKLETIKGQLSTRVIDLFAPIGFGQR
GLIVAPPKAGKTSLLKAIAKGISANYPDAKLLLLLIDERPEEVTDLERTVNGEVVYSTFD
QHPENHVRVAELLLERAMRLVEDKQDVIILLDSLTRLARAYNLVVPPSGRTLSGGIDPAA
LYKPKKFFGAARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNQELHLSRELAERR
VFPAVDIKRSGTRKEELLLSQEKLDALWKLRKNLSNDLVSDTEQVLQLLRNSQDNAEFCG
KIEKMMK
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcgacatctgaaaataaagatatcaaagaattaacaattgctgaattggaaaacatg
acgctaaaggaaatttataattacgcaagaatttataaaattccttactatagcaaaatg
aataaaaaagaattatctttagcggtaattcgagcacaagcaaataaaaatggtttctat
atgaaaggaattttagaaatagttcctaatcaagatggttatggattcttgagacctatc
aattatggaccatcacaagaggatatctatatttcagcatcacagattagacgatttggt
ttaagaaatggtgatgaagttgcagggacagctcgcccacctcgacaaggcgaaaaattt
tatggaattttacacgttgattctgtaaataataaggatcctgaagaagccaagaaacgc
gatcattttccagctttaactcctatttatccagataaacaaattaaattagaaacgatt
aaggggcaattatctacacgtgtaatagacttgtttgcaccgattggatttggacaacga
ggtctaatagttgcaccacccaaagcaggaaagactagtttgttaaaagcaatagctaaa
ggaatttctgcaaattacccagatgcgaaattgttattattactaattgatgaacgtcca
gaagaagttacagatttagaaagaacagttaacggtgaagttgtttactcaacttttgac
caacatcctgaaaatcatgtacgtgtagcagaattattgctggaaagagcgatgagatta
gttgaagataaacaagatgttattatcttattggattctttgactcgtttagccagagct
tataacttagtagttccgccaagtggacgtacactttctggtgggattgatccggcagcc
ttatataagccaaagaaattctttggagcagcacgtaatattgaagagggcggaagcttg
acgatcttggcgactgcattagtagatactggttctcgtatggatgatgttatctatgaa
gaatttaagggaactggtaaccaagaacttcacttatcacgtgaattggcagaaagaaga
gtctttcctgctgtcgatataaagcgttcaggaacaagaaaagaagaattattattatca
caagagaaattggatgcattatggaaattgcgtaaaaacttgagtaatgatttagtttct
gacactgaacaggtgctacaacttttacgtaattcgcaagataatgctgaattttgtggt
aaaattgaaaaaatgatgaaataa
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