Lepeophtheirus salmonis (salmon louse): 121114330
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Entry
121114330 CDS
T08214
Name
(RefSeq) general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03022
Basal transcription factors
lsm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121114330
09124 Replication and repair
03420 Nucleotide excision repair
121114330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsm03021
]
121114330
03400 DNA repair and recombination proteins [BR:
lsm03400
]
121114330
Transcription machinery [BR:
lsm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
121114330
DNA repair and recombination proteins [BR:
lsm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
121114330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
Motif
Other DBs
NCBI-GeneID:
121114330
NCBI-ProteinID:
XP_040564192
LinkDB
All DBs
Position
3:complement(14611058..14612820)
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AA seq
405 aa
AA seq
DB search
MEEDDKEYRWESGYEKTWEAIQEDGKGLIHVSIQDIIDKARRKRLAQKTGKVRLGMMRYL
FIIIDASECMQLQDMKPTRLHCVIKLMEKFIDQYFYLNPISQLGIIVTRNKRSEIVSELG
GNPRKHIEKLRKALDFICSGEPSLQNALETAFLSLKHMPSHGSREILSIFGSLTTCDPTD
INLTISTCKSSNIRCSVISLTAEVRIYKELTKVTGGDFNVILDDVHFKEVLSAQLEPPPS
ATQMEASLIKMGFPCHTGHDSSDPRSGLGLCMCHLENNPPKISLTGFLCPQCNAKYCELP
VECQSCGLTLVSAPHLARSYHHLFPLPPFNQINRDSTHKDMNVEEIPHRQCFACMLKLPP
ETKIFSCPQCHKDYCNECDIFLHETLHSCPGCASIRCLPNTNGHS
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagatgacaaggagtatcgctgggaatcgggctatgaaaagacatgggaagcc
atccaggaggatggaaaaggacttatccatgtctccatccaggacatcattgacaaggcc
agacggaagcggcttgctcaaaagacggggaaagtccgtttgggaatgatgcgatatttg
tttatcatcattgatgcctccgagtgcatgcaactccaagatatgaaacccactcgcctt
cactgtgttattaaacttatggaaaaattcattgatcaatatttctatctgaatcccatc
tcacaattggggatcattgtcactcgcaataagagatctgaaatagtgagcgaattggga
gggaatccccgcaaacatatcgaaaagttgaggaaagctcttgactttatttgttcggga
gaaccttcccttcaaaacgctctcgaaacagcatttctctctcttaagcatatgcccagt
catgggtcaagggaaatcctctccatttttgggtctcttactacatgtgaccctactgat
atcaatctaactatatccacttgtaagagctccaacattagatgctcagttatctcattg
acggcagaggtaaggatatacaaggaactcaccaaagtcacgggaggggactttaatgtc
attcttgatgatgttcattttaaagaagtattgtcggctcagcttgaacccccaccttct
gcaacgcaaatggaggcctcactcattaaaatgggttttccatgccatactggtcatgac
tcttcagatcctcgatctgggctcggcctatgtatgtgccacttggaaaataatccacca
aagatatccctaacaggatttctatgtccccaatgcaatgccaagtattgtgaactacca
gtcgaatgtcaatcatgtggcctaaccttggtttcggcaccacatttagctcgatcctat
catcatctctttccattacccccttttaatcagatcaatcgtgattccacgcataaagat
atgaacgtcgaagaaattcctcatcgacaatgttttgcttgtatgctgaagcttcctcca
gaaacaaaaatttttagctgtccccagtgtcataaagactactgtaacgagtgcgacata
ttcctccatgaaacactacattcctgcccgggctgcgcatccataagatgtcttccaaat
acaaatggtcactcttag
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