Lepeophtheirus salmonis (salmon louse): 121115795
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Entry
121115795 CDS
T08214
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121115795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsm03041
]
121115795
Enzymes [BR:
lsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121115795
Spliceosome [BR:
lsm03041
]
Complex C
Other components
Step II factors
121115795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
AAA_22
DEAD
AAA_19
nSTAND3
T2SSE
SLFN-g3_helicase
AAA_30
Microtub_bd
SRP54
cobW
Flavi_DEAD
Sigma54_activ_2
AAA_7
Motif
Other DBs
NCBI-GeneID:
121115795
NCBI-ProteinID:
XP_040565865
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All DBs
Position
4:34353478..34357097
Genome browser
AA seq
1097 aa
AA seq
DB search
MDRLEGSDTTRQGGLIIKKKSSSKSKDSSRHEKKEGSVLGLDRLAAEKRRHIRHRVEESP
SSDRGVSQEALRRREERLRKGRRRREREWEAETPRREEYNGDDTPYLGKPKDTPSRTAWD
EEEGGAPSTSVWDLETPRNHVRRSDETPLPTPTFKKNSWNRRSSYRDGSSSSRREHRKME
AGDKEAWEEEQKRLDREWYSIDEGYDESHNPFSGISSEYTKKKEEQQELKRNRRLTAKQA
QRHKDNEMWEKNRMFRSGAVTRTDFDEDFEEISEAKVHLLVHNIIPPFLDGRIVFTKQQE
PVVPLKDPTSDMAVVSKKGSHLVRVHREQNERRKAQKKEWELAGTKMGNILGVKKEDDRE
DKNADDELDFKGSQKFADHMKVNQESKSHFSKSKTLKQQREFLPIFAVRQQLLNIIRDNS
VIIIVGETGSGKTTQLTQYLHEDGYTKYGIIGCTQPRRVAAMSVAKRVADEVGSELGEDV
GYSIRFEDCTSENTLVKYMTDGILLRESLREPDLDHYSAIIMDEAHERSLNTDVLFGLLR
SVVARRTDLKLIVTSATMDSKKFADFFGNVPVYTIPGRTFPVDLLYSKTTVEDYVDAAVK
QAIQVHLGGGEGDMLIFMPGQEDIEVTCDQIKERLAQVDEAPALAVLPIYSQLPSDLQAK
IFQAAPDGLRKCVVATNIAETSLTLDGIMTVIDSGYCKMKVFNPRIGMDALSIFPVSQAN
ANQRSGRAGRTGAGNCYRLYTERQYREELLASTVPEIQRTNLSNVVLLLKSLGVENLLSF
HFMDPPPEDNILNSMYQLWILGALDNTGQLTKLGRKMVEFPLDPSLSKMLIISEEMQCSL
DVLIIVSMLSVPAIFFRPKGREEDSDAAREKFQVPESDHLTYLNVYNQWKTNGYSASWCS
DHFIHIKAMRKVREVRAQLKEIMEQQKMKLISCSTDWDIIRKCICAAFFHQAARLKGIGE
YVNTRNGLPAHLHPTSALFGMGFTADHIVYHELVMTSKEYMQCVTAVDGHWLAELGPMFY
SIKNTGKTQSEKRRVALEHQANMEVEMKKAEGELKKRKVDEEAKAEKERNKMIIATPGRT
PVKTPSGSSKRTFHFGI
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atggatcgtttggagggatccgacactactcgtcagggaggattgattattaagaagaag
agcagtagcaagagcaaggattcatccaggcatgaaaagaaagaaggaagtgttttgggc
ctggatcgtcttgcagccgaaaaacgtcgccatattcgacaccgtgtggaggaatctccg
agttcggatcgtggagtgagtcaagaggctcttcgacgaagagaagagcgtctacgaaag
ggacgtaggcgaagagaaagagaatgggaggcggaaactccacgaagagaggagtacaat
ggggacgacactccctatttgggaaagcccaaggacacgccctctcgcacagcttgggat
gaggaagaaggaggagcaccctcaacctctgtatgggatctggaaacaccgcgaaatcat
gttcgtcgcagcgatgagactcctttgcccacaccgacctttaaaaaaaactcgtggaat
agaaggtcatcctacagggatggctcctcctcttctcgtcgagagcaccgcaaaatggag
gcaggggacaaagaagcttgggaagaggaacaaaagcgcctagatcgggaatggtactcc
atcgatgaaggatatgatgagtctcataatcccttttcagggatatcctcagaatatacg
aagaagaaggaagagcaacaggaactcaaacgaaacagacgtcttacagctaaacaagct
caaagacataaagataacgaaatgtgggaaaagaatcgtatgtttagatcaggagcggtc
actcgaacggattttgatgaggactttgaggaaatttctgaggctaaagttcatttactc
gttcataatataataccaccctttctggacggaaggattgtgtttacaaagcaacaagag
ccagtggttcctcttaaagatcctacttcggatatggctgtcgtctctaaaaaaggatct
catctcgtacgagtgcatcgtgagcaaaacgaacggaggaaggctcagaaaaaggaatgg
gaacttgcagggactaaaatgggtaatattcttggggtgaaaaaggaagatgatcgtgag
gataaaaatgctgatgatgaattggattttaaaggctctcaaaaatttgctgatcatatg
aaagtgaatcaagagagtaaatcccacttttctaaatctaaaacccttaaacaacaaaga
gaatttcttccgatctttgctgtgagacaacaacttctcaacattattcgagataatagt
gtaattatcatcgtcggagagactggatctggcaaaactactcagttgactcagtatctc
catgaggacggatatacaaaatatggtataattggatgtactcaacccagaagagtagct
gcaatgtctgtcgcgaaaagagtagcagatgaagtgggaagtgagttaggggaagatgtg
ggctactccattcgatttgaggactgtacttcagagaacactctggtaaaatatatgaca
gatggtattttattgagagaatcattgcgagaaccagatttggatcattatagtgctatc
atcatggatgaagcccatgaaagatctcttaacactgacgtattgtttggattactgagg
tccgtcgttgctcgaagaacagatttaaagcttatcgtaacctctgctacaatggactct
aagaaatttgcagacttctttggtaatgttccagtatatacaatccctggaagaacattt
cctgtggatcttctttacagtaaaacaactgtagaagactatgtggatgcggctgtgaag
caagctatacaagttcatcttggaggaggagaaggagatatgttaatatttatgcctggt
caagaggacattgaggtcacttgtgatcaaatcaaagaaagacttgctcaagttgatgaa
gcaccagctctagcagtccttcctatttattcccaattaccatcagatctacaagctaaa
atctttcaagctgctcctgatggactgagaaagtgcgttgttgctacaaatattgcagag
acctcactaactctggatggtattatgactgttatcgactcgggttattgtaaaatgaag
gtctttaatccgagaataggtatggatgctctctccattttccctgtatcacaagcaaac
gcaaatcaaagatccggtcgggctggtcgaacaggtgctggtaactgctatagactttat
actgagcgtcaatatagagaagagcttcttgcctcaactgttccagaaattcaacgtaca
aatttgtctaatgtagtattactgctaaagtctttaggagttgagaatttgctctccttt
cacttcatggaccctcctcctgaggacaatatcttgaattctatgtatcaactctggatt
cttggagctctagacaatacgggtcaattaaccaaattgggaagaaaaatggttgagttc
cccctcgatccgtctctgagtaaaatgctcatcatttctgaggaaatgcaatgcagtctt
gatgttcttatcattgtatccatgttgtccgttcccgcaatttttttccgacccaaaggt
agagaagaggactcggatgctgctagagaaaagtttcaagttcctgagtcagatcacttg
acatatctaaatgtgtacaatcagtggaagaccaatggatactccgcctcttggtgctcg
gatcactttattcatattaaagctatgaggaaagtgcgtgaggtacgagctcaactaaag
gaaatcatggaacaacaaaagatgaagctcattagttgctctacggattgggatataatt
cgaaagtgcatttgtgctgcttttttccatcaagccgcaagactcaagggcattggagag
tatgtaaatactcgcaacggccttcccgctcatttacatccaacgtctgctctctttggt
atgggatttacagcagatcatatcgtctatcatgagttggttatgacttctaaggagtat
atgcagtgtgtgactgctgtggacggtcactggcttgctgaattgggtcccatgttctac
tccatcaaaaatactggcaaaacgcagtctgaaaagagaagagtggctttagagcatcaa
gccaacatggaggtagaaatgaaaaaagctgagggagagctcaagaaacgtaaggtggat
gaggaagccaaggctgagaaggagcgtaataaaatgattattgcgacccctggacgaact
ccggttaaaactccctctggcagttcaaaaaggacatttcattttggaatttaa
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integrated database retrieval system
