Lepeophtheirus salmonis (salmon louse): 121116772
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Entry
121116772 CDS
T08214
Name
(RefSeq) regulator of nonsense transcripts 3B-like
KO
K14328
regulator of nonsense transcripts 3
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03013
Nucleocytoplasmic transport
lsm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121116772
03015 mRNA surveillance pathway
121116772
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121116772
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121116772
mRNA cycle factors
P-body specific factors
121116772
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
121116772
NCBI-ProteinID:
XP_040566991
LinkDB
All DBs
Position
4:15907045..15909928
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AA seq
411 aa
AA seq
DB search
MRMGIFPFVGRISTFLKQEDVFNFTERFDGYVFLDKQGNEYPAIVEFAPYQKVSKVKTDQ
RPDAKCNTLDTDKEYLAFVEAYENKENENIAHPTPEQYLEEIENREKIKETSTPLLEFLA
LKKINKKGKFREKKSRRQRMGDAGHKHEKGWRGKNDSKESNEPGEEPVKKKRNDDERRSR
RNREDKKHASDSKDDSSRKNYTEDSGHGERTRRHNRDENKNGSESKEEPSRKKNTDDESD
RSWRQSREDKKESSEGKEEVVSSKRYSDRRHDDRGRWGERSRNKYKDNDAGYSQPITVLQ
KDDFPAINSGSKDNENDSGGNTKSKNSKRSNTERIKNKERPAIQIYRPGMGKFSSQTIKS
DSAKEDEGGKCEEPQDSGNKSSKSFKKYSHKQYYAGGGARFRRTERKESND
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgaggatgggaatatttccttttgtcgggcgtatttcaacttttttgaagcaagaggat
gtgtttaattttacggaaaggtttgatggatatgtatttctggataagcaagggaatgaa
tatccagcaattgtggaatttgctccttatcaaaaagtgtccaaagtgaaaacagatcaa
cgtccagacgcaaagtgtaatacccttgacacggataaggagtatttggccttcgttgag
gcatatgaaaacaaggaaaatgagaatattgcgcatcctacacctgaacaatacttggaa
gaaattgaaaatcgtgaaaaaattaaagaaacaagcactccacttttggaattcttagct
ctaaagaaaattaataaaaaggggaaatttagggaaaagaaatctcgtcgtcaaagaatg
ggagatgctggacataagcatgaaaagggatggcgaggcaaaaatgattcaaaggaatcc
aatgagccaggagaagaacccgtgaaaaagaagcgtaatgatgatgaaagaaggagtcga
cgaaatagagaagataaaaaacatgcttcagattccaaagatgactcatcaagaaaaaat
tacacggaggactctggacatggtgaaagaactagacgccataatagagatgagaataag
aatggatcagagtcgaaggaagagccttctagaaaaaaaaatactgatgatgaatcagat
agaagttggcgtcagtctagagaggataaaaaagaatcctctgaaggaaaggaagaagta
gtgtcatctaagcgatactcagatcgacggcatgacgatagaggtcgttggggtgagaga
tcaaggaacaagtacaaggataatgacgcaggttactctcaacccataaccgtacttcaa
aaagatgatttcccagccataaattcaggatccaaagataatgagaacgatagtggtgga
aatactaagtccaagaattcaaaaagaagtaacacagagagaataaaaaacaaagagcga
cctgcaatacaaatttatagacccggtatggggaaattcagttctcaaaccatcaagtca
gactctgcgaaagaagatgaaggtgggaaatgtgaagagccccaggattcagggaataag
agctcaaagtcttttaagaaatattctcataaacaatattacgcaggtggtggggcacgt
tttcgtcgtaccgagagaaaagagagcaatgattaa
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