Lepeophtheirus salmonis (salmon louse): 121117364
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Entry
121117364 CDS
T08214
Name
(RefSeq) cullin-4A-like isoform X1
KO
K10609
cullin 4
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03420
Nucleotide excision repair
lsm04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121117364
09124 Replication and repair
03420 Nucleotide excision repair
121117364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lsm04121
]
121117364
03400 DNA repair and recombination proteins [BR:
lsm03400
]
121117364
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lsm04147
]
121117364
Ubiquitin system [BR:
lsm04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Cul4 complex
Cullin
121117364
DNA repair and recombination proteins [BR:
lsm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
121117364
TCR (transcription coupled repair) factors
Cul4-CSA complex
121117364
Exosome [BR:
lsm04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121117364
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cullin
Cullin_Nedd8
Ribosomal_L36
Motif
Other DBs
NCBI-GeneID:
121117364
NCBI-ProteinID:
XP_040567701
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All DBs
Position
5:24409903..24412952
Genome browser
AA seq
796 aa
AA seq
DB search
MHHHQSSAVNGRKREILVSSPPSNQQEKKRLKMDSKGVQQQQPNFSCPCLCFSLYNGANG
GSKNLGGGNQATARKLVIKNLKAQPTLPSDFVSKSLEKLRRATLAIQTSEPIRDATLEEL
YQAVETLCAHDAAQRVYADLKALVEAHVETVREFLTPGGESLDKLIFMKKMNASWTSHCR
QMIMTRSIFLFLDRTYVLQNPSVLSIWEMGLDTFRRYVLTHPAVQTRTVDGILMLIEQER
HGDMVDRSLLKSLLRMLSDLQIYKEAFEKKFLVATEKLYSAEGRKLVNERDVPEYLSHVE
KRLKEENERFIHYLDISTKWQLIHTVEKQLISEHMTTILTKGLDTLLEENRKVELRLMYS
LLGRVKGGCIELKAKMCEFVKKRGKVLVVNPEKDKTMVQELLDFKDKLDTIMSECFTGND
QFVVGMKEAFETFINIRQNKPAELIAKFVDSKLKAGNKEASEEELEKLLDKIMVIFRFIH
GKDVFEAFYKKDLAKRLLVGKSASVDSEKSMLSKLKAECGAGFTSKLEGMFKDMELSRDI
NIAYRQHLEGLKSANNKIDMTVNVLSMAYWPTYQPMEVTMPSEMAKYQELFKKFYHAKYS
GRKLQWQPNLGHAVLKANFKSGHKELRVSLFQTLVLLLFNYADELPFAEIKVSSNIEDGE
LRRTLQSLACGKIRVLKKLPKGKDVMDADKFYFNKEFTHQLCHIKINQVQMKETNDEQKA
TEERVFQDRQYQIDAAVVRIMKMRKTIFHNLLITELYNQLKFPVKPPDLKKRIESLIDRD
YMERDKDNTNQYNYVA
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgcatcatcaccagagctcggctgtaaatggtcgtaagcgtgaaatccttgtaagttct
cctccgtcgaatcaacaggaaaagaaacgtttgaaaatggattccaagggtgttcagcaa
caacagcccaacttcagttgcccatgtctctgtttcagcctctacaatggtgcaaacggt
ggttccaagaatctaggaggagggaatcaggcaacggccaggaagctggtgatcaagaac
ctgaaggcccaacccacgctgccttcggacttcgtgagcaagtcacttgagaagctacgt
cgagccacacttgccatccagacttctgagcccattcgagatgccaccttggaagagctc
tatcaagcagtggagactctttgtgcacatgatgcggcgcaaagagtgtacgccgatctc
aaagctctggttgaagctcacgtggagacagtgagagaattcctgactcctgggggagag
tctctagataaactgattttcatgaaaaaaatgaatgcgagttggacctctcattgccga
caaatgattatgacgcgctccatctttctcttcctcgaccgtacctacgttcttcaaaac
ccaagtgttttgtccatttgggaaatggggctagacacttttcgacgctatgttctaact
catcctgccgtacaaacgcgtactgttgatgggattctaatgttgattgaacaagagaga
cacggagatatggtggacagaagtttgctcaagtctttacttcgcatgctcagtgatttg
caaatttataaggaggcgtttgaaaaaaagtttttggtagcgacagagaagctttattct
gcagaaggaagaaaactagtaaatgaaagagatgttcctgagtacttgagccacgttgaa
aaacgtttgaaagaagaaaatgagagatttattcattatcttgatataagtacaaaatgg
caattaatccatacagtcgaaaagcaacttatttcggaacatatgactaccattctcaca
aaaggcttagacactcttttagaagagaatcgtaaggtagagttgagattaatgtattcg
cttttaggtcgtgttaaaggtggttgtatcgaacttaaagctaaaatgtgtgaatttgtc
aaaaagcgcggtaaagttctagttgtcaatcctgaaaaagataagactatggttcaagag
ttacttgattttaaagataaattggatacaattatgtcggaatgctttactggaaacgat
caatttgttgttggaatgaaagaagctttcgaaactttcattaatattcgtcagaataaa
ccagctgaacttattgctaaatttgttgattctaagctcaaagcggggaataaagaagct
tctgaagaggaacttgaaaaacttttagacaaaatcatggtcatatttaggtttattcat
ggaaaggatgtgtttgaagcattttataaaaaagatctagctaaacgtttattggtagga
aaatctgcttctgtagattcggaaaaatccatgttgtcaaagctgaaagctgagtgtggt
gcgggctttacttcaaaacttgaaggaatgttcaaggacatggaacttagtagagacatt
aacattgcttatagacaacatttggagggacttaaatctgcaaataacaaaatagatatg
acagtcaatgttttaagtatggcttattggcctacatatcaacctatggaggtaacgatg
ccttcagagatggctaagtatcaagaattgttcaagaaattttatcacgccaaatattct
ggaagaaagttgcagtggcaaccaaatctagggcatgccgtgctcaaagctaattttaaa
tctggccataaggaattgcgagtctctctttttcagaccctagttctactattatttaac
tatgctgatgaattaccttttgcagaaataaaagtgtcatcaaacattgaagatggagag
ttaaggagaacattacaatcccttgcttgtggaaaaattcgcgtactaaaaaagttacct
aaaggaaaagatgtgatggatgctgataaattctatttcaacaaagaattcactcatcaa
ctctgccatattaaaatcaatcaagttcaaatgaaagaaacgaatgatgaacagaaggca
actgaggaacgggtcttccaagataggcaatatcaaatagacgctgcagtcgtgcgtatt
atgaaaatgagaaaaactatatttcacaatcttctcattactgagctgtataatcaactc
aaattcccagttaaacctccagacctaaagaaaagaattgaatctctgattgatagggat
tacatggaaagagataaagataataccaatcaatataattatgttgcttaa
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