Lepeophtheirus salmonis (salmon louse): 121119124
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Entry
121119124 CDS
T08214
Name
(RefSeq) ATP-dependent RNA helicase Ddx1-like
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsm03041
]
121119124
03016 Transfer RNA biogenesis [BR:
lsm03016
]
121119124
Enzymes [BR:
lsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121119124
Spliceosome [BR:
lsm03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
121119124
Transfer RNA biogenesis [BR:
lsm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
121119124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
RVT_2
Motif
Other DBs
NCBI-GeneID:
121119124
NCBI-ProteinID:
XP_040569695
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All DBs
Position
5:complement(3375365..3378235)
Genome browser
AA seq
729 aa
AA seq
DB search
MTAFEEFGVMPEIAASVDEMGWHLPTDIQSEAIGQILGGGDVLMAAETGSGKTGAFCIPL
LQVTWEFLRDLSNPKKGKKDAGGDDQGWKLSINDRGSEFTLLPGALRCQSRHLKDWHGGR
TCQGVAGIGKYYFETYVKDEGICRVGVSCGSANLNLGTCKKGYGFGGTGKKSNNRQFDDY
GESYGKASVIGCFLDLNNGDISFSKDGKHLGTAFKISQDQKREAFFPTVSLKNSELELNF
GDSPFKYPPSNGFIAFSKAESKDVVKNPRAPSSKILTKINNAPLAIIIEPSRELAQQTCN
QIKLFKTHMEQPFVKELLVVGGADIKSQIAELKSGIDIVIGTPGRLEDLVNSGHLSLEQV
RFFVLDEADGLLKSGYENMIVRFHGNIPKMTSDGSRLQMIVCSATLHSFEVKKLAEKLMH
FPTWVDLKGQDSVPDTVHHVIVKVNPEVDHSAFNNRYLIQTDGVHKNDRTGTGITTPEGL
SEAAKMLKGEYCVRAIDEHKMDHGIIFCRTKVDCDNLERHFNKIGGGSKNSANPYSCVCL
HSDRTPNERTSNLAKFKNKEVKFLICTDVAARGLDIKGLPFMINMTLPDEKSNYVHRIGR
VGRAERMGLAISLISTVKEKVWYHGCPKRGKGCYNTNLTSNGGCCIWYNEIQCLADIEEH
LGITIQQVSTEIRIKADEFDGKVVYGAKRKELGTGYIGHASELAPTLAELQRLEKEAQTK
FLRKLYGKA
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgactgcctttgaggaatttggtgtcatgcctgaaatcgcggcctccgtggacgaaatg
ggctggcatcttcccacagatattcaaagtgaagccattggccaaatccttggtggaggc
gatgtcctcatggcagcagaaacgggctccggtaaaacgggtgcattttgtataccatta
ctccaagtgacttgggagtttcttagggatttaagtaaccccaagaaaggaaagaaggat
gctggaggggatgaccaaggttggaaactttccatcaatgatcgtggatcagagttcaca
cttcttcctggagcattgcgatgccagtctaggcatttaaaagattggcatggagggcga
acatgtcaaggtgtagctggaatagggaagtactattttgagacctatgtcaaggatgaa
gggatctgccgggttggagtgagttgtggctctgcaaatctgaatctgggaacatgtaaa
aaaggttatggttttggtggcacgggtaaaaagtcaaataaccgtcaatttgatgattat
ggtgagtcttatgggaaagcaagtgtgatagggtgttttttggatttaaataatggagat
attagctttagcaaggacggtaaacatttaggaacagccttcaaaatatctcaagatcaa
aagagagaggcattttttccaacggtatcattgaaaaattcagaacttgaattaaatttc
ggtgattctccatttaaatatccgccaagtaatggttttattgcattcagcaaagcagag
tctaaagatgttgttaaaaatccaagggcacctagtagtaagatcctaacaaagatcaat
aacgctccacttgctataattattgagccgtctagagaattggctcaacaaacatgtaat
caaataaaactatttaaaactcatatggaacaaccttttgtcaaggaacttcttgttgtt
ggaggagctgatatcaaatctcaaatagcagaactcaaatctggcattgatatagttatt
ggtactcctggtcgccttgaggatttagttaatagtggtcacctttccttagagcaagtt
cgttttttcgtattagatgaagctgatggattactcaaatcaggctacgaaaatatgatc
gttagatttcatggaaatatacctaaaatgacaagtgacggatctagacttcaaatgatt
gtatgctctgctactcttcattcttttgaagtgaaaaagttggcagaaaaactaatgcat
ttccccacatgggtcgacttgaaaggacaagattcagtgccagatactgttcatcacgtt
atagtaaaagtcaatcctgaggtggatcattcagcattcaacaatcggtatcttatccaa
acagatggagttcataaaaatgataggacgggaacgggcattacaacaccagagggactt
tcagaagctgctaaaatgcttaaaggggaatattgtgtacgtgccattgatgagcataaa
atggatcacggtattatattttgtcgcactaaagttgactgtgataatttggaacggcac
tttaataaaattggcggaggatccaaaaattcagctaatccatactcatgcgtttgtctt
cattccgatagaaccccaaatgaaagaacatcaaatcttgccaagtttaaaaacaaagaa
gtcaaattcttaatttgtacggacgttgctgcaagaggattagacatcaaaggattgcca
tttatgattaacatgaccttgccagatgaaaaatcaaattacgtgcatagaattggaagg
gtgggtcgtgctgaaagaatgggtctagcaatatctctaatatctacagtgaaggaaaaa
gtttggtatcatggttgtccaaaacgtggtaaaggatgttacaatacgaatttaaccagc
aatggtggttgctgcatctggtataacgaaattcaatgtttagctgatattgaagagcac
ctaggtataaccattcaacaagtctcaacagaaattagaataaaggctgacgaatttgat
gggaaagttgtatacggtgcaaaaagaaaagaactaggtactggttacataggtcatgcg
agcgaattagctccaactctagcggaattacagcgtctagaaaaagaagcacaaacaaag
tttttgagaaaactgtatgggaaagcttga
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