Lepeophtheirus salmonis (salmon louse): 121122387
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Entry
121122387 CDS
T08214
Name
(RefSeq) general transcription factor IIH subunit 4-like
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03022
Basal transcription factors
lsm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121122387
09124 Replication and repair
03420 Nucleotide excision repair
121122387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsm03021
]
121122387
03400 DNA repair and recombination proteins [BR:
lsm03400
]
121122387
Transcription machinery [BR:
lsm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
121122387
DNA repair and recombination proteins [BR:
lsm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
121122387
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
121122387
NCBI-ProteinID:
XP_040573293
LinkDB
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Position
8:12239996..12242426
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AA seq
454 aa
AA seq
DB search
MSSSSSLSCRNLTDYLKTLSDDTLRSLYNHPATCLVVFRDLPPLGKLFVMRLLYVGQPVP
KAVISSWVVSKHNVNADRAVKALTDLRIWSEASMSGGLPAWILQNVFRINLKTALFGGGS
PWSMSAPLDLDPNRRDALFLDQYAMERWDTVLHYMVGSSQQEGISADAVRILLHSNLMRL
SDEDGPIITRTGFQFLLMETPSQVWYFILQYLDTVNARGMDVTECLKLLFQLSFATLGKD
YSTANFSQSLLMFLQHLREFGLVYQRKRTSGRFYPTRLVLNIALGEQKAELEKKREGYLV
VETNYRVYAYTSSNLQVALIGLFAELLYRFPNLTVAVVSRDSIRQALRAGITADQIIRYL
KMHIVPKSQIKNASLPPTIVDQIRLWEEERNRFTFTEGVLYNQFLSHADFELVRNYAENL
GVCVWSNSQNRTIVVTKDGHDNVKKFWKRHSRGA
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgtcgtcttcgttatcctgtcgtaatttgacggattacctaaagacactttcg
gatgacacacttcgtagtctttacaatcatcccgcgacgtgtcttgtggtgtttcgggat
ttacctcctctaggaaaactgtttgtgatgcgacttttgtatgtggggcagccggttcca
aaggccgtcatttcatcctgggtcgtgtcaaagcataatgttaacgcggatagagctgtc
aaggccttaacagacctacgcatttggtcagaggcctccatgtccggcggccttcccgca
tggatcctacaaaacgttttccgtattaatttaaagacggcacttttcggaggaggatct
ccgtggagcatgtccgcacctctggatctggatccaaacagacgagacgctttgtttttg
gatcagtacgccatggaacgatgggacacagtccttcattacatggtgggatcctcgcag
caagagggaatctctgctgatgctgttcgcattttacttcattccaatctcatgagactg
agtgatgaggatggacccatcatcactcgaactggctttcagtttcttctcatggaaaca
ccctcgcaagtctggtactttattctacaatatcttgacaccgtaaatgcacgcggcatg
gacgttacagaatgtcttaaattgttattccaactatcctttgcaactcttggaaaggac
tatagtacagcgaattttagtcagagcttactcatgtttctccagcatttacgagagttt
ggcctggtttatcagagaaagagaacgtctggaagattctatcctactcgccttgtactc
aatatcgctcttggcgaacaaaaagctgagcttgaaaagaaacgtgaaggatatctagtt
gtagaaacgaattatagagtatatgcatatacctcctctaatctccaagtcgcacttatc
ggcctcttcgcagaacttctatatcgttttcctaatttgacagtggctgttgtttctcga
gattccataagacaggctcttagagcgggtataaccgcggatcaaatcatccgttacctg
aagatgcacatagtacctaaatcccaaattaaaaacgcgtctttaccgcctaccattgtt
gatcagatacgtctttgggaagaagaacgcaatcgcttcactttcactgagggtgttctt
tataatcaatttctatcacatgctgactttgaacttgttagaaattatgcggaaaattta
ggggtttgtgtttggtcaaattctcaaaacagaaccattgttgtgacaaaggatggacat
gacaatgtcaaaaagttttggaagagacatagtcgtggagcttaa
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