Lepeophtheirus salmonis (salmon louse): 121123226
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Entry
121123226 CDS
T08214
Name
(RefSeq) uncharacterized protein LOC121123226
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121123226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsm03021
]
121123226
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121123226
Transcription machinery [BR:
lsm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121123226
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
121123226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Pcf11_helical
CFIA_Pcf11
zf_UBZ
zf-C2H2_3
Motif
Other DBs
NCBI-GeneID:
121123226
NCBI-ProteinID:
XP_040574287
LinkDB
All DBs
Position
8:16365510..16374484
Genome browser
AA seq
1507 aa
AA seq
DB search
MSMQFTDASDKETAEAYEEGLAQLTDNARHVIMHLTELAHDYSRDRKERVIVAVIERHIR
KVKTGHKLPALYLMDSIVKNHQTPYRDLFQQNIVSTFASVFITAPEKVRSLMYRLRNTWN
DIFTPTKMFQLDKKVKTMDPAWPIVNTPPASSSTKVHTTSPQPNIHVNPAVFNRPRDDNA
SIFEEVQRKERELLELRKKKLELELEVTRKEVEERQSKVEREPSKSTQRSSKKTGDERSC
SSQRRDPRIREKTESNSKRNDIVANGTHDCKDSDSTATLSSPSNRYIKDSKSSHKSKSSS
FSPSKSKAKSSLSHDRSRKSKDSLSSRNKKNSSSSSSSKKQSSSSSKMNKSSPPPSPKKR
EREPSSSPSPPPSEHSVEQSNDTPCSSSMASIQDQQSRVKELGRIPKKITKRADDSPQPP
PVDVFPEEESHVEFNQGRFSKQSTIKRRGANIKDDESTPPEKKKKDMPIDLFGDELKNDV
HSQLLVDIQNDPLPSPSTTGWAKFKETNPDEFHTPIRNGRRHGPNDRFNIGNDFRGGRGG
FGHRRSRSDRRHLGGNSTNGNDAFGPFDHNQPTTNSIFNNNMIEMVLQNMQNPEHVRNEV
IPTIVKQARENLQSGCMNNTQFSELMRQVMTLKEQAMMIQAERRSNDPPFQGHKPQNVSQ
PPNFQQPMPFFNQQIFNGDQPQQQSRPPFRPHVRDLPQANPEDLEFIKNDPVKTIPIDGE
SREIRQYDEVCTVVMGDCELKELSFQPGTRRVIIDDKVIVSCELDVKHYTNVMIDGVEHR
IKIGAPTRELWIDGQWYECYFDNKVNVLVGMAYHSFFLEGPAPTVKIGERRADLCPGKVN
LIVDGDFSIMTSIFLDSKPQKFDIDGKPHVIRFVEGLKTVLINGHPYRTEFGGMPMVIFV
EGIKHFVRLTVLPRGIIPGQAQIKNMPMGLGISNVSSFNRSEDEIRSPTQRITNQTSSPK
EMEKEDNSNVVPPFLTESENSNGASLENVDEVGSSSAFDKLLTLFPKSLGSDGENKIDNY
KSEKLMQETNETEPLEEPKDEAVDVHNLWKQLLGAGLVSTGSDINEGLKAKKSIPGLDSS
IPQEDEIDKENLNPKEDSSSIIKQKEPPTTDVKMSEIKPIILKSHNSTLKERQQGIVNQL
YDPSALQCKNCGMRYSPMDMISYSQHLDWHFRMKRREKDNAKKAQSRRWYFERMDWIVSD
EIEEEDKENTNTEPSVAEKVIPTVPASQVKEENTCPICKEEFEQFYKDDTDEDGKWLLYN
AIQQEDRVFHPQCYQDFTEDRNLNSSTLSHEDSVNQSNFEDSTVSEEGKVIHPMDVGNSG
TLNLNVKLEKEEIKEENVDNELLESKEDIKIKSEPEDVVVKEEVEEDVSKSESVTVKSEH
SDDEASSPDDLNDEETLDGMVDESPAILSAPKTIRVNLTTPIPGSGSSSPKQTETDNTFV
ENGKGDHTEEVSKKADEENEFDSDAIIQKFEKTNEQEDSKLGLKGKKLIIIPPQKKDGEL
SGLCSIM
NT seq
4524 nt
NT seq
+upstream
nt +downstream
nt
atgagtatgcaattcacggatgcgagtgataaggagactgcggaagcctatgaggaggga
ttggctcaactgacggataatgcgaggcatgtaattatgcatctcacagaattagctcat
gactactctcgcgatcggaaggaacgagtgattgtggctgtgatcgaaagacacatacga
aaggtgaaaactggacataagcttcctgcgttatatcttatggattccatagtcaagaac
catcaaactccttatcgagatctttttcaacaaaacatagtttctacttttgcctctgta
tttataactgctccagaaaaggtacggtctctgatgtatcgcctacggaacacttggaac
gatatctttactcctaccaaaatgtttcaactagacaaaaaagtgaaaaccatggatcct
gcctggcccatcgtcaatacacctccagcatcttcctccaccaaggttcatacaacttct
cctcagcccaatattcatgtcaatccagcagtttttaatagacccagggatgataatgcc
tccatctttgaagaagttcaacgcaaggaaagagaacttttagaattacggaaaaaaaag
ctggaattagaattggaagtcacgcgaaaagaggtggaggagcggcaatccaaggttgaa
cgagaaccatctaaatcgactcaacgatcatcaaagaagacaggtgatgaaagaagctgc
tcatctcagcgtagagatccgagaattcgggaaaaaacagaatccaatagtaaaagaaat
gatattgtggcaaatggtactcatgattgcaaagattcggactcaactgcaacattatct
tcaccttcgaatcgatatatcaaggattcgaaatcatctcataaatcaaagtcatcatcc
ttttcaccctcaaaatcaaaggccaagtcgtctttaagtcacgatagatcgcggaaatct
aaagattctttgtcttcaagaaataaaaagaattcatcatctagttcttcttcgaagaaa
caatcgtcaagttcctctaaaatgaataaaagttcacctccaccatctcctaaaaaaagg
gaacgagaaccttcgagttctccatctcccccaccatcagagcactcggttgaacaaagt
aatgatacgccttgtagcagctccatggcttctatacaagatcaacagtcaagagttaaa
gagctaggaagaataccaaagaagataactaaaagggctgatgattcaccacaacctcca
ccagtagatgtatttcctgaagaagagtctcatgtagaatttaatcaaggaagattttct
aaacaatctacaattaagcgaaggggtgctaacatcaaagacgacgaatctactcctccc
gagaaaaagaaaaaagatatgccaattgatttgtttggtgatgaattaaagaatgatgta
cactcacaacttctagtagacattcaaaacgatccacttccaagtccatctactacaggc
tgggctaaatttaaagaaactaatcccgatgagtttcatactccaataagaaatggtcgc
cgtcatggtccaaatgatagatttaatataggaaatgactttagaggtggccgtggtggt
tttggacatagacggtctaggtctgaccgtcgacatcttggtggtaattcaacaaacggg
aacgatgcttttggaccttttgaccataatcaaccaactacgaattctattttcaataac
aatatgattgaaatggttcttcaaaatatgcaaaatcctgagcatgtgcggaatgaagtt
attccaacaattgtcaaacaagctagagaaaacttgcaatcgggttgcatgaataatact
caattctcagaacttatgaggcaggtgatgactctcaaagagcaggccatgatgattcaa
gctgaaagacgttcgaatgatcctccctttcaaggtcataagccacaaaatgtatcccag
cctcccaacttccagcaaccaatgcctttcttcaatcaacaaatttttaatggtgatcag
cctcagcaacagtctcgtcctccttttcgacctcacgtccgtgatttacctcaagctaac
ccagaagatcttgaatttattaagaatgatccggttaagacaatacccattgatggtgaa
agtcgtgaaatcagacaatatgatgaggtttgcactgttgttatgggagattgtgaactt
aaagaattgtcattccaacctggtacgcgtagagttataattgatgataaggtcattgtg
tcctgtgaattagacgtcaaacattatacaaatgttatgattgatggcgttgagcataga
attaaaataggtgctcccacaagagagttatggatagatggccaatggtacgaatgctat
tttgataacaaagtgaacgtgcttgttggtatggcgtatcattcattttttctggaaggt
cctgccccgacagttaaaattggagaacggagagcagatttgtgcccgggaaaagttaac
ttgattgttgatggggattttagtataatgacttcaatttttctcgattcaaaacctcaa
aagtttgatattgatggcaaaccacatgtcattcgttttgttgaaggccttaaaacagtt
ttaattaacgggcatccctacagaacagaatttggtggaatgcctatggtaatatttgta
gaagggataaagcattttgttcgtttaactgtacttccaagaggtattattcctggacaa
gctcagattaaaaatatgcctatgggacttggaatttctaatgtatcatctttcaatcga
tctgaagacgaaataaggtctccaactcaacgaattacaaatcaaacctcctcgcctaag
gaaatggaaaaagaagataattctaacgttgtaccaccatttttaacagaatcggagaat
tcgaatggagcttctcttgaaaatgttgatgaagttggtagctcaagtgcttttgacaaa
ctacttacccttttccctaagtcattgggttcagacggtgaaaataaaatcgataattac
aaatcagaaaaactaatgcaagaaaccaatgagactgaacctttagaagaacctaaggac
gaagctgttgacgttcataatttatggaaacaattgttgggagctggtcttgtatcgact
ggaagcgatataaatgaaggtttgaaggctaaaaaaagcattccaggtttggacagttca
attcctcaagaagacgaaatagataaagaaaatttaaatcccaaagaagattcttcaagt
attattaagcaaaaggagccacctacaaccgatgtaaaaatgtcagaaattaagcccata
attcttaagtcccataacagcactttaaaagaacgacagcaaggcatagttaatcagctc
tatgatccatcagctcttcaatgtaaaaactgtggtatgagatattctcctatggatatg
atatcttattcacaacatttggattggcattttcgaatgaaacgtagagaaaaagataac
gcaaagaaggctcagagtcgtcgctggtatttcgagcgaatggactggattgtttcagat
gaaattgaagaagaggataaagaaaatactaatactgagccaagtgtggctgagaaagta
atacctacagtacctgcaagccaagttaaagaagaaaatacatgtcccatttgcaaggag
gaatttgaacagttttataaggatgatacagatgaggatggaaagtggcttttatacaat
gctattcagcaagaagatagagtgtttcatcctcaatgttatcaggattttacagaagac
agaaacttgaattcttcaacactttctcatgaggactctgtaaatcagtctaattttgaa
gattctactgttagtgaggaaggtaaagttatacatcctatggatgtaggtaattcaggc
actttgaacttaaatgtcaagttggagaaggaagaaattaaggaagaaaatgttgataat
gaattactcgaaagtaaagaagatataaaaatcaaatctgagccagaagatgtagttgtt
aaagaagaagttgaagaagatgtttctaaatctgaatccgttacagtaaagtctgaacat
agtgatgatgaggccagctctcctgatgatttgaatgatgaagagactctagatggaatg
gttgatgaatcgcctgcaattttatctgctccgaagactattcgagttaatctaactact
ccgatccctggatctggatcttcttcaccaaaacagactgaaactgataatacatttgtc
gaaaatggaaagggtgatcatactgaagaagtatcgaaaaaagctgacgaagaaaatgaa
tttgattctgatgcgattattcaaaaatttgaaaaaacaaacgaacaagaagattctaag
ttagggcttaaaggaaaaaagctcattatcatacctccacaaaaaaaagatggagaactc
tctggtttatgttctataatgtaa
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integrated database retrieval system
