Lepeophtheirus salmonis (salmon louse): 121126897
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Entry
121126897 CDS
T08214
Name
(RefSeq) RING finger protein nhl-1-like isoform X1
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121126897
04121 Ubiquitin system [BR:
lsm04121
]
121126897
Enzymes [BR:
lsm01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121126897
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121126897
Ubiquitin system [BR:
lsm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
121126897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
DUF5128
SGL
WH2
Phytase-like
zf-C3HC4_3
zf-RING_UBOX
Serine_rich
Motif
Other DBs
NCBI-GeneID:
121126897
NCBI-ProteinID:
XP_040578187
LinkDB
All DBs
Position
12:complement(4086851..4187075)
Genome browser
AA seq
1233 aa
AA seq
DB search
MSYVPAAELSSRSDLLKSIQEGKRLRKTVTNDRSAPNISSDSRSKTLSYGDVNKRLPGIR
GLFADGAEKTGLDESSSYSRKVIPLINHCEMEQFDQLLTCCICLDRYKNPKLLPCQHSYC
MEPCMEGLVDYVKRQIKCPECRAEHRIPYNGIQGFPSNITMQKFLELHTEITGELPDPNA
DAIMQRCAVCSEKAYLNPCAHCDKKCCIDCKDAHCDILKREITRINNQIKRGVHRLEEIL
EQVGRNQSSLENNANIVMRDIDEIQRRLTTALKERTDYLKATVENYLVSEMRDLKTLKSH
LELELINITSNSDLMEKHLNDESTKWDDNELMDCKDIFIKMMDFIRNYDAGSDEYNRRIR
FSSHDSVNDIAKKIIDIGDLKLHESSIGRPSNGYGRSDNDEYDPPIRGLSRSKSDHRLVA
EFRRREEDNRSPPLRRRFGEARYSREDNKSRTNFSRYDEDEDTTLNSSGSSRFRSRFLRT
DDEDDFSGSVTNRKSSYLDEDEGTSNKSKTFRCKVVETEDASRGPLSGCIRLADSTRIIH
RLKEMELELKKTELKKHELKEHNSSPSQSVVSKLKSRRSPLVPKCSNIDEDEIDRIKKEN
KALEKNDSIEIKSDSSNILKNIHSNSNDRQISSNHTRSLAHSSSSDDDYQFDNEGGEKEN
TDKEINGTANSPIEDEDDDEYEYYDEEEDEVDEFPTTLGSNDIIPTIEKNIEQNGGSSLI
SSINLKDTSSKEPSITKECPFTIEKNNNYVSSEEINMPSNYECKSFDTEHHNVSIKRRVR
RDSDSFVNRYLAKSKNVTESVPEQNTIYIDKNDENATQRISGDSQYPSGRSRYAALRDRK
NKISRSKSSVLLTQQGIDDLSHEDLDHTFPMTPFTTRYGCELAKSKSSHNVKNNIEPHNK
SISDHSKIEETNLSSWAKYLKTKYNGRKKGEDSSQSSSISNIIEIGARGQYLQKQEALLT
FGSRGSQNGYFTWPRGIAVGPDNTIVVADSSNHRVQVFNEFGNHKFSFGGYGNDVGEFDC
LAGVAVNRIGQYIIADRYNHRIQLFDPSGHFLRSFGSQGSSDGKFSYPWGLTTDALGFIY
VCDKENHRVQVFQSDGSYVGKFGTVGTKPGQLEHPHYIAVSNTNRVIVSDSNNHRIQIFD
INGKVLTTFGSEGTGDAQFKFPRGVSVDEQGYIFVADSGNNRIQIFNPDGTFLRSFGRWG
QNEGEFKGLEGIAVNSGGKILIADRENHRVQIF
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacgttcctgctgcagaattaagttcgaggtcggatctactaaaatcaatacaa
gaaggaaagaggttacgaaagactgttacaaatgatcgttcagctcccaatatttcttca
gattcgagatctaaaactttgagttatggggatgtaaacaaacggttaccaggaataaga
ggcctttttgccgatggagctgaaaaaacaggattggatgagtcgagctcatatagcaga
aaagtgattcctttaataaaccattgcgaaatggaacaatttgaccaattattaacatgt
tgcatttgtttggatcgatataagaatcccaagttgttaccatgccaacattcatattgt
atggaaccctgtatggaagggcttgttgattacgtaaaaagacagattaaatgtcctgaa
tgtagagccgaacatcgaattccctacaatggtattcaaggatttccatcaaatattact
atgcaaaaatttttagaattgcatacagaaataacaggagaattacccgatcctaatgct
gatgcaataatgcaaagatgtgctgtttgttcagaaaaagcatatctaaatccatgtgcc
cattgcgataagaaatgttgcattgactgcaaagacgctcactgtgatattctgaagcgt
gaaattactcggataaataatcaaatcaaacgaggtgttcaccgtctcgaagaaatactt
gagcaagtaggtcgaaatcaatcgtctttggaaaataatgcaaatatagtcatgcgagat
atagatgaaattcaaagaagacttacaactgcattgaaagaacgcacagactatttaaag
gctactgttgaaaattatcttgtttctgagatgagagacttaaaaacgctaaagtctcac
cttgaactagaattaataaacattacctctaattctgatttaatggaaaaacatttgaat
gacgaatcaaccaaatgggatgataatgagttaatggactgtaaagacattttcattaaa
atgatggatttcattcgtaattacgacgccgggtctgatgaatataatcgtcgcatacga
ttttcgtctcatgattcagtgaatgacattgcaaaaaaaattattgatattggagattta
aaattacacgaatctagtattggaagaccatcaaatggatatggtcgcagtgataacgac
gagtacgatcctccgataaggggtttatcacgttcaaaatctgatcatcgactggtagcc
gagtttagaagaagagaagaggataatcgatccccacctttgagaagacgatttggtgaa
gctcgttactcaagagaagacaacaagagtagaacaaattttagtcgttatgatgaagat
gaagatacaacactaaattcaagcggaagctccagatttagatcacgtttcctcagaaca
gatgatgaagatgattttagtggatcagtaacaaatagaaagtcttcctatcttgatgaa
gatgagggaacaagtaataaatcaaagacttttaggtgtaaagtggtagaaacagaagat
gcatcacggggacccctgtctggatgtataagactagcagactctactcgaattatacat
cgactaaaggaaatggaattggaattgaaaaaaactgaattgaaaaagcatgaattaaaa
gaacataactccagtccatcacagtcggttgtcagcaagttaaaatctcgacgttcccct
ttagtacctaaatgttctaacatagatgaagatgaaattgatcggattaaaaaagaaaat
aaagcattagaaaaaaatgattcaattgaaataaaatcagatagttcaaatatattgaaa
aatattcattccaactcaaatgatcgacaaatttcctcaaaccatactagatcactagca
cattctagtagttccgatgatgattatcagtttgataatgaagggggagaaaaggaaaat
accgataaagagataaatggaacagctaactctcctatagaagatgaagatgatgatgaa
tatgagtattatgatgaagaagaagatgaagtagatgagtttccaactacgttaggctca
aatgacattataccaacaatagaaaaaaatattgaacaaaatgggggttcttctcttata
tcatcaattaatctcaaagatacttcttctaaggaaccatcaattacaaaagaatgcccc
tttactatagaaaaaaataacaactatgtgagtagcgaagaaattaatatgccttcgaat
tacgaatgtaaatcatttgatacagaacatcataatgtttccataaagcgtagagtacga
agagattcggatagttttgtaaatagatatcttgctaaatcaaaaaatgttactgaatct
gttccggaacaaaatactatttatattgataaaaacgatgaaaatgctacacagaggata
agtggggacagtcaatacccttctggcagatcacgctacgcggctcttagagatcgtaaa
aataaaatttcacgtagtaaaagctctgttcttttgacacaacaaggcattgatgattta
agtcatgaagatcttgatcatacatttccaatgacaccctttactacacgatatggatgt
gaattagcaaagtcaaaatcaagtcacaatgttaaaaacaatattgaaccccataacaaa
tcaatttcagatcattcaaaaattgaagaaactaatttaagttcgtgggctaaatatctc
aaaacaaaatataacggtcgtaagaaaggcgaagattcaagtcaaagttcgtcaatttct
aatataattgaaataggagcacgaggacaatatctccaaaaacaagaagctttgttgact
tttggaagtcgaggaagtcaaaatggttattttacgtggcctagaggtatagctgtggga
ccagacaatacaattgttgtagcagattcttcaaatcaccgcgtacaagtctttaatgaa
tttggtaaccacaaattcagttttggtggttatggtaatgatgtaggcgaattcgattgt
ttagcaggagttgcagtaaatcgaattgggcaatatattatagctgatcgatataatcat
cgtattcagctatttgacccatcaggtcatttcttaagatcttttggatcgcaaggttct
tcagatggaaaatttagctatccgtggggtctcacaacagatgcactaggattcatatat
gtttgtgacaaagaaaatcatcgtgtacaagtatttcaatcagatggctcttatgtagga
aaatttggcacagttggaaccaaaccagggcaattagaacatcctcattatattgctgtt
agtaatactaatagagttattgtatcagattctaacaatcatagaatccaaatatttgat
atcaatggtaaagtcttaacaacatttggatcagagggaactggtgatgctcaatttaaa
tttccaaggggagtatcagtagatgaacaaggatatatatttgtggcggattcgggaaac
aatcgtattcaaatttttaacccagatggcacatttcttagatcgtttggtcgatgggga
caaaacgaaggagagttcaaaggtcttgaaggaatagctgtaaattctggtggaaaaatt
cttattgcagatagagaaaatcaccgtgtacaaatattttag
DBGET
integrated database retrieval system
