Lepeophtheirus salmonis (salmon louse): 121128240
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Entry
121128240 CDS
T08214
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
121128240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsm03400
]
121128240
Enzymes [BR:
lsm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
121128240
DNA repair and recombination proteins [BR:
lsm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
121128240
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT
BRCT_2
RNA_ligase
mRNA_cap_enzyme
LIG3_BRCT
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
121128240
NCBI-ProteinID:
XP_040579752
LinkDB
All DBs
Position
13:28020531..28026125
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AA seq
906 aa
AA seq
DB search
MSTQRDLWESKVKFETFSNFLEKLSRETRKQKKIFILHSFFKDCRSLWNDKQNYSLFPIV
RLLLPNLDRERKSFGIKETVLAKLYIDMLSLGSDSKDAIKLKTYRVPKGGQSVSQAGDFA
SILYEVIKDRCYEGSTDFSIFNFNEMLNEIADESGGRKSVEHILGSMFRKMNAVQQKWTV
RIILKDTKLGLGLNTILGVIHDDAKEYYEAHANLRMVCEKLKDRNVSVNEIQIRLMDPFK
PMLADRMPVTKIESTYGGRPFYIEKKYDGERLQIHFQRYPDVQFKFFSRNGFDFSEDFTF
FQETILIEIFNDFTSLIVDGEICTFNRHMDIIMQKGDQHNIRAIKADDPDLQQCFCIYDI
LLLNGVVLTNKSFKTRLELLRDNFKDKEMIGRFVLAENWKGEVKQDAIDALNDAIDRREE
GIVLKDPQSVYKPGARAGGGWIKLKPEYAEQIVDTLDLVILGGYYGSGKRVSGLISHFLL
GVLDDTNEDDEPCFLTFTKVGSGYSMRELLNVLQKISPNFSKTLPNGIKYQNKAGGRADV
WIDPKKSVILQVKATEFIYSDLYATGVSLRFPRVETVRHDKSWNDCMTLSEMSSLQELGD
GKLNVGRYVESEHEEKNEQPLPRKRAKRTAKVYSSLQGPEKTDVIIQTLDLKDKVIVVEP
ANTKLKKELEEIVIKYGGNVEQNVSENQTYAYVETGLKIRAKGIIKSGKYDVVKSSWLLD
CDEKGFRAFGPCDMVFTTTETLNSFRENYDKFDDPYFERTNIDGLKYSITKVKELEEELS
LDSLDIAEFEDKFYSSPSSYVYGLFRKIESYFDIFEEFFVYKQVRDELDPLHFGRICFEF
YGGSFPMSSKRDRLSHVFVNTDETERIKALKNIRKDWSKKFYILTIDWIFECVEKRSIVS
ETPYLF
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacccaaagggatttgtgggagtccaaggttaaatttgaaaccttttcaaacttt
ctcgaaaagctatcgagagaaactagaaaacagaagaagatttttatcctacactctttc
ttcaaggattgtagaagtctttggaatgacaaacaaaactattctctttttcctattgta
agacttcttctcccaaatctggatagagaacgaaagtcatttggtataaaggaaactgtt
cttgcaaaactttacatcgatatgttgagtcttggatcggattcaaaagatgcaattaaa
ttaaaaacatacagagtgcctaagggtgggcaatcggtatctcaagctggagattttgca
tccatattgtacgaagtaatcaaagatagatgttatgaaggatccactgatttttccatt
tttaacttcaacgaaatgctcaatgaaatagctgatgaaagtgggggaagaaaaagtgtg
gaacatattcttgggtcaatgtttcgtaaaatgaatgctgttcagcaaaagtggactgtc
aggattattcttaaggatacaaaacttggactagggcttaatactattttaggagttatt
catgatgatgcaaaagaatattatgaggctcatgccaatcttcgaatggtatgcgaaaag
ttaaaagatagaaatgtaagcgtgaatgaaattcaaattcgtttaatggatccttttaag
ccaatgttggctgatcgtatgcctgtgactaaaattgaatcaacttatggaggtcgtcca
ttttatattgagaaaaaatatgatggagaaagacttcaaattcattttcagagatatcct
gatgttcaattcaaatttttttcacgcaatggttttgatttttcggaggattttacattt
ttccaagaaacaattttaattgaaatttttaatgattttacgagtttaattgtggatgga
gaaatttgcacgtttaatcgtcatatggatataataatgcaaaaaggtgatcaacataat
attcgtgccattaaggctgatgatccggatcttcaacaatgtttttgtatctacgatata
ctcttattaaatggtgtggttctaacaaataaatcgtttaaaacacgtctagagttgttg
agagacaactttaaggataaggaaatgataggaagatttgttttggctgaaaattggaaa
ggagaagtcaaacaagatgctattgatgctttaaatgatgctatagatcgtagagaagag
ggaatagtgctcaaagatccgcaaagcgtatacaagccaggagcaagagcgggtgggggt
tggataaagctcaaaccagagtatgcggagcaaatagtcgatactttagatttagtcata
cttggaggctactatggaagtggtaaaagagtctcaggattgatcagccattttttattg
ggcgttttggatgatacaaatgaagatgatgaaccttgtttccttacatttactaaagtt
ggatctggttactccatgagagaattattgaatgttttgcaaaaaatatcacctaatttt
tctaagactttgccaaatgggatcaaatatcaaaacaaggccggaggaagagcagatgta
tggattgatccaaagaagtctgttattcttcaagttaaagcaactgagtttatttatagt
gacctttatgccacaggagtttcacttaggtttccaagagtagagacagtacggcatgat
aaatcttggaatgattgtatgactcttagtgaaatgtcttcactacaggaattaggagat
ggtaagttaaacgtaggtcgatatgtagagagtgagcatgaggagaaaaatgagcaacct
ttacccaggaagcgtgccaaaagaacagcaaaagtttattcatctcttcaaggtcctgag
aaaaccgatgtaattatacagactttagatctaaaggataaagttatagtggttgagcca
gcaaatactaagttaaaaaaagaattggaagaaatcgttattaagtacggaggaaatgtt
gagcagaacgtatctgagaatcaaacctatgcctatgttgagacgggacttaaaattcgt
gctaaaggaataatcaagtcaggcaaatatgatgttgtaaaatcttcttggcttttagat
tgtgatgaaaaaggttttagggcttttggtccgtgtgatatggtttttacaacgacagag
acattaaattcctttagagaaaattatgacaaatttgacgatccttactttgaacgcaca
aatattgatgggcttaagtattccattacaaaagtcaaagaactagaagaagaactctct
ttggattctttggacattgcagaatttgaagataagttctattcatcaccttccagctat
gtttatggcctttttaggaaaatcgaatcctattttgacatatttgaagagttttttgtg
tacaaacaagttcgagatgaattagatccacttcattttggaaggatttgttttgaattc
tacggaggctctttccctatgagctcaaaaagggacagattgtctcacgtatttgttaat
acggatgaaacagagcgaataaaggcattgaaaaatattcggaaggattggagtaaaaag
ttttatattttaactattgattggatatttgaatgtgttgaaaaaagatcaatagtctca
gaaacgccttatttattttaa
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