Lysinibacillus sphaericus: Bsph_3075
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Entry
Bsph_3075 CDS
T00656
Name
(GenBank) Putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lsp
Lysinibacillus sphaericus
Pathway
lsp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Bsph_3075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsp03400
]
Bsph_3075
Enzymes [BR:
lsp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Bsph_3075
DNA repair and recombination proteins [BR:
lsp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Bsph_3075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
mRNA_cap_enzyme
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
ACA40588
UniProt:
B1HPE2
LinkDB
All DBs
Position
complement(3023480..3025297)
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AA seq
605 aa
AA seq
DB search
MKPMLLTEANEIPIGDDWLYETKYDGFRCLLIWDEQPILISRNGRNLNHSFPEIIDYCHQ
IHASVKAFLPLIFDGELVYLSNPYKSEFSVVQQRGRMQNQDVIAKHAQAFPMRLLVFDML
MIKGESFSNRYLKTRKEQLAKLAAKVKLPNVDDQDGKVIQIVQAKEESNILWQAIKVYNG
EGMVAKKKTSKWLDNTRSSHWLKIKNWRYVTVIVTQYDHSNGYFQGSIYDGGNLREVVTF
KHGMKEEEHQTLVAFFQAQGQRKKELWELEPSICVDIACIDFDGSKLREPKFHAFRLELT
PDICQWQHMQRQLFPIPETVPITHPDKPVWPEIGVTKDHYLSYLQSVSPYLLPFLQDRPL
TLIRYPHGVPGESFYQKSRPDKLPDFVGTAMMDEIDYMVCNNLETLLWLGNQLALEWHIP
FQTRQTMNPTEIVFDLDPPSTDHFSLAIAGALDLKGIIDYFQLQSFVKTSGGKGLQLYIP
LPANKFTYEEVRVFTEFACRFLCQQKPHLYTIERLKKNRHNKLYLDYVQHAEGKTIIAPY
STRGNELGLVATPLHWEEVNDDLKPYYFSIPAVMERMKKISNPFKYFREVGEQQDFQAVL
DRINE
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaatgcttttaacggaagcaaatgaaattccaataggggatgactggctttat
gaaacgaaatatgatggctttcgatgcctcttaatatgggatgagcaaccgatacttatt
agtaggaacgggcgcaatttaaatcattcgtttcctgaaattatagattattgtcaccaa
atacatgcttcagtgaaagcatttttaccactcatttttgatggggagcttgtgtattta
agcaatccatataaaagtgaattttctgttgtccagcaaagagggagaatgcaaaatcaa
gatgtcattgcaaagcatgctcaagccttccccatgaggcttctcgtgtttgatatgtta
atgatcaaaggggaatcgtttagcaaccgttatttaaaaactcgtaaagagcaattggca
aagctagcagcaaaggtaaagcttcccaatgtagatgatcaagatggaaaggtcatacaa
attgtgcaggctaaggaggaaagtaatattttatggcaggcgattaaggtctacaatggg
gagggcatggttgccaagaagaaaactagtaaatggctggataacacacgctcaagccat
tggttgaaaattaaaaactggcgttatgtgacagtcattgtgacgcaatatgatcatagt
aatggctatttccaaggttccatttatgacggaggaaatttacgagaggttgttacattt
aaacatggcatgaaggaggaagagcatcaaacactcgttgctttttttcaggctcaaggg
caacgtaagaaagaattgtgggagttagagccttctatttgtgttgatattgcctgcata
gattttgatggtagtaagctccgagaaccaaaatttcatgcctttcgattggaattaaca
ccagatatttgccaatggcagcatatgcagcgacagctgtttcctattcctgaaacagtt
cctataacacatcctgataaacctgtatggccagaaataggtgtaacaaaggatcattat
ttatcgtacttacaaagtgtttcgccctatttattgccatttcttcaagatcgcccatta
actttaatacgctatccacatggtgttcctggggaaagcttttatcaaaaaagtagacca
gataaattacctgattttgtaggcacagcgatgatggatgagattgattatatggtctgt
aataatcttgaaacattgttatggctgggcaatcaattagcattagagtggcatattcca
tttcaaacacgacaaactatgaatccgacagagattgtcttcgatttagatcccccttca
acggaccatttttctttggcgattgcaggggcactagatttaaaaggaattattgattat
tttcagctacaatcatttgtcaaaacttcaggcgggaaagggttacagctctatatcccg
ttaccagcaaataaatttacctatgaggaggttcgcgtttttactgaatttgcttgtcgt
tttttatgccaacaaaagccacatttatatacaatcgagcgattaaaaaaaaatcgccat
aataaattatatttagattatgtgcagcatgctgaaggtaagacgataattgccccttat
tccactcgtggaaatgaattaggcttagtcgcaacgccactccattgggaagaggttaat
gacgatttaaaaccctattatttttcgattcctgctgttatggagcgaatgaagaaaata
agcaatccttttaaatactttcgagaagtaggggaacaacaggactttcaagcagtttta
gatcgtataaatgaataa
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