Lucilia sericata (common green bottle fly): 119606047
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Entry
119606047 CDS
T08270
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lsq
Lucilia sericata (common green bottle fly)
Pathway
lsq03013
Nucleocytoplasmic transport
lsq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsq00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119606047
03015 mRNA surveillance pathway
119606047
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsq03019
]
119606047
Enzymes [BR:
lsq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119606047
5.6.2.5 RNA 5'-3' helicase
119606047
Messenger RNA biogenesis [BR:
lsq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119606047
mRNA cycle factors
Common to processing body (P body) and stress granule
119606047
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
AAA_16
AAA_22
ATPase
SRP54
nSTAND3
AAA_10
AAA_5
Motif
Other DBs
NCBI-GeneID:
119606047
NCBI-ProteinID:
XP_037815348
LinkDB
All DBs
Position
Unknown
AA seq
1225 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEENDLIGADTQASDFDYRDLTLASQTQSSQLEGGLGASGGIG
SQNLRKLDLQTKLGTANGSADLQFEEEDEDNALCPVDVLPPHACKYCGIHDPGTVVMCNN
CKKWFCNGRGSTSGSHIVNHLVRAKHREVTLHSEGPLGETVLECYSCGVRNVFVLGFIPA
KADSVVVLLCRQPCAAQNSLKDMNWDQDQWKPLISDRSFLPWLVKVPTEQEQLRARQISA
AQINKLEELWKENIEATFQDLEKPGIDTEPSQVLLRYEDGYQYEKIFAPLVMLEAEYDKK
LKESQTQEGIEVRWDIGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELHKPWDAVGH
VIKVPDNFGEDVGLELKSSAKAPVHCTSNFAVDFIWKCTSFDRMRRALKLFAFDRNSVSN
YIYARLLGHGRPDGLDEPVFRGLPPKLYSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPG
TGKTVTSATIVYQLVKQHGGTVLVCAPSNTAVDQLTEKIHRTNLKVVRVCAKSREAIDSP
VSFLALHNQIRNMETNIELKKLQQLKDETGELSSADEKRYRTLKRAAENQLLEAADVICC
TCVGAGDARLQRIKFTSILIDESMQSTEPECMVPVILGAKQLILVGDHCQLGPVVMCKKA
ARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRKLKID
FPWPQPDRPMFFLVTQGQEEIAGSGTSYLNRTEAANVEKITTRFLKAGVKPEQIGIITPY
EGQRAYLVQYMQYQGSLHSKLYQEIEIASVDAFQGREKDIIIMSCVRSNEKQGIGFLSDP
RRLNVALTRSKYGTIIVGNPKILSKQPLWNHLLNFYKDRKVLVEGSLNNLRESLIQFQKP
KKLVNTLNMGAHFMSTMMADAREAIVPGSFYDRSGQFGYSGTTTANNFGYNFGNNLIGGN
NSAFGFTNNAHLQNMGGQNAGNNAMNNYMNSAHSAGGMPGGFNAPGSQRSNMNQFNSNMS
NGPSNNQHNWHNFQHDSISYISAERAQAAMNNMPVPVGMFMNMSNIPPRFYNQHQQAIQA
AAKQGRRTAGFSGNQSNATGTTKNPPLNKAPGKGRNTNSATSANATAALSSTSAATDVMS
ASNLTGSGNSSQTTAPIFTQKNMSQQMSQTVFTGLSQQPELSQDFGQISQMDGILSQDVG
FGTDALNNDRLNLGLNSQSQFSQPY
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtggatgcttatggacccagttctcagaccttaacatttttggataccgaggag
aatgatttaattggagccgatacacaagcatctgactttgactatcgtgacttaaccttg
gcctctcaaactcaatcttcacaacttgaaggtggtctaggtgctagtggtggtattgga
agtcaaaacttacgcaaattagatttgcaaacaaaattaggcaccgccaacggctcagct
gatctacagttcgaagaggaggatgaagacaatgccttgtgtccagttgatgttttacct
ccgcatgcttgtaaatactgtggcattcatgatcccggcaccgtggtaatgtgcaacaat
tgtaaaaaatggttttgcaatggccgtggcagcacttcgggttcgcacattgtcaatcat
ttagtacgtgccaagcatcgtgaagtcactttgcactccgaaggtcccttgggagaaaca
gtgctcgagtgttattcttgtggtgtacgtaatgtattcgttttgggttttataccagcc
aaggctgattcagtggtcgtgctgctttgtcgtcaaccttgtgcagctcaaaattctctt
aaagacatgaattgggatcaagatcagtggaaacctttgatatcggatcgctcctttctg
ccgtggctggtaaaagtacccaccgaacaagaacaactgcgtgcccggcaaatttccgct
gcgcaaattaataaactagaagaattgtggaaggagaatattgaggccacttttcaggat
ctagaaaaacccggcatagacactgaaccctcgcaggtgttgctgcgttacgaggatggt
tatcaatacgagaaaatatttgctcccttggtcatgttggaagccgaatatgataagaaa
ctaaaggaatctcagacgcaggaaggtattgaggtacgttgggatatcggtttgaataag
aagaccatagcctactttaccttggcgaaaaccgattctgatatgaagctaatgcatggt
gatgaattgcgtttgcgttatgtgggtgagctgcataaaccctgggatgctgttggacat
gtcataaaggtgcccgataactttggcgaggatgtaggcttagaattgaaatcatctgcc
aaggcccctgtgcattgcacctccaattttgctgtagattttatatggaaatgtacttcg
ttcgatcgtatgcgcagagccttaaaattattcgcctttgaccgcaattctgtatcaaat
tacatatacgctcgtctcttgggtcatggccgtcccgatggtctagatgagccggtgttc
cgtggtcttcctcctaagctgtacagtgctcctaatttacccgatctaaatcgttcccag
gtgtatgctgtcaaacatgctttacaaaggcctttgagtcttattcagggtccaccaggt
accggtaaaactgttacttctgctactattgtctatcaacttgttaaacagcatggtggc
actgttctagtatgtgctcccagtaacactgctgtcgatcaattaactgagaaaattcat
cgcaccaatttgaaagtggtacgagtctgcgccaagtcccgtgaagccatcgacagtccg
gtcagctttttggctttacacaatcagatacgcaacatggaaacaaacattgaattgaaa
aaactccagcaattaaaggatgaaaccggcgaattgtcatcggctgatgaaaaacgctat
agaacattgaagagggctgcggaaaatcaacttttggaggcagctgatgttatttgctgt
acttgtgtgggtgccggtgatgctcgtttgcagcgcattaaattcacttcgatattaatc
gatgaatcgatgcagtctaccgaaccggagtgcatggtccccgttatattgggtgctaaa
caattgattctagttggcgatcattgccaattgggtcctgtggttatgtgcaagaaggcc
gcaagagctggtctttcccaaagtcttttcgaacgtttggtcgtcttgggtatacggcct
ttccgtttggaagtacaatatcgtatgcatcctgaattgtcccagttcccatcgaatttc
ttctatgaaggttcactgcaaaatggtgtttgcgccgaggatcgtaaattgaaaattgac
ttcccctggccgcaaccggaccgtcccatgtttttcttggtaacacaaggtcaagaggaa
attgccggttccggtacttcctatcttaatcgtaccgaggccgccaatgtggaaaagatt
acaacgcgctttttgaaagccggtgttaaacccgaacaaatcggcatcattacaccctat
gaagggcagagagcctacctagtgcagtatatgcaatatcagggcagtttgcactctaaa
ttgtatcaagaaatagaaatagccagtgttgatgccttccagggaagagaaaaggatata
attatcatgtcctgtgttagatcgaatgaaaagcaaggtattggtttccttagcgatccc
agacgtctcaatgtggctttaacccgttctaagtatggcaccattattgtgggtaatcca
aaaattctttccaagcaacctttgtggaatcacttgcttaacttctacaaagatcgcaaa
gttttggtagaaggttctttgaataacttgagagaatcgctcattcaattccaaaagccg
aaaaaattggtcaataccttaaatatgggagctcacttcatgagcaccatgatggcagat
gccagggaggcgatagtgcctggttcattttatgatcgttcgggacaatttggttattcc
ggcactactacagccaacaattttggttacaactttggcaataatttgattggtggcaac
aattcagcctttggtttcaccaataatgctcatctacaaaatatgggtggacaaaatgcc
ggcaataatgctatgaataattatatgaattccgctcattcagctggtggtatgccaggt
ggttttaatgctcccggttcacagcgttcgaatatgaatcaattcaattcgaatatgagc
aatggtccatcaaacaatcaacataactggcacaacttccaacacgattcaatttcttac
atatcggccgaaagagctcaagcggccatgaacaatatgccagtgccagtgggtatgttc
atgaatatgagcaatataccgcctcgtttctacaatcaacatcaacaggccatacaagcg
gctgccaaacagggtcgtcgtactgccggtttttctggcaatcaatctaacgcaactggc
acaactaaaaatccaccacttaacaaagcccccggtaaaggccgcaatacaaactctgct
acttcagccaatgccactgctgcattgtcatcaacatcagctgctactgatgtaatgtca
gcctcaaatttgaccggttctggcaactcgtcacagaccacggcgcccatatttacccaa
aagaatatgtcgcaacaaatgagtcaaaccgtattcaccggtttatcgcaacagccggaa
ttatcacaagattttggtcaaatatcacaaatggatggtatattatcgcaggatgttggt
ttcggaacggatgcactcaacaacgatcgcttaaatttaggacttaattctcagagccaa
ttttcacagccttattga
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