Lucilia sericata (common green bottle fly): 119608274
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Entry
119608274 CDS
T08270
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC119608274
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
lsq
Lucilia sericata (common green bottle fly)
Pathway
lsq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsq00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119608274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsq03021
]
119608274
03019 Messenger RNA biogenesis [BR:
lsq03019
]
119608274
Transcription machinery [BR:
lsq03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119608274
Messenger RNA biogenesis [BR:
lsq03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
119608274
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
CFIA_Pcf11
Pcf11_helical
Motif
Other DBs
NCBI-GeneID:
119608274
NCBI-ProteinID:
XP_037818560
LinkDB
All DBs
Position
Unknown
AA seq
1936 aa
AA seq
DB search
QETNKKNLNFLYLKQVPSEIKLPILYLIDSIVKNVKSTYVQLFSQCIVNIFCGAFEKVNE
KIRERMYALRQTWNEVFSAQRLYALDVKVKRLDHNWPITAKQPSIHVNPNFLKANNAQAI
PTEMEKILQDKTRELLELKKRKLELELEATKKHLEEQEKQFSKTAEGVIAPVEALVAANS
LQTVGIRGAAMPTQMMPGLMAPGYMGGPSIAVNPAMRPAMFHANIRGFRPNLHPNMMNNT
AQGMQGGNMMPAAMNAANLNKPKVHPVNSALLNSVRQRDPRLQRQQQQQQQQQQQMQQQQ
MQQNNERSLAAQQQNVRSSHLDKDKHERNHKSSHKSPTRINSSSRSSGSSSSRSSKSSQR
DKERERDRERKRSESKSSTTSSSSSGSNATNNERKKGFSKTDKTTSKCDKDAFEIAPLAT
AFKRKSTSPTSSPTKSRDSKRSSSHKTRNLSRSKTRSRSRSPDDKTNNSRTTFGDVDLRR
NSTSSTSSSMINSPEKRPKIIDSDQETCSKNNKKEDLLKTTTTTTVANNNNNNNSEKELD
KKKSTENILSPETTTAAAASLNTNRSSTDTLKETETMLKKDEVAAAGSQVSKDVEEDGKK
RPLAPVKDEEPLAKKSKSAKLDALFGSEDVDLRQLIPPVLTVSTSPQDDIAPPPPAINIT
GDVSRERNENWDNLKTDNNKNATTKAKSSLEDVRAKLAKTAKFNKLSKLDKLTRDIDHRN
KLAELQMNDDTQEANDEKIRTMISQAQELLETKSISQDQYKHLVKTVMSINETNKLKEAQ
RRESLNAIKQKTINTDEGSNDSTERNMAMQAILKKRIPKLNKGQTAVGEQNTDSQQSEGS
NGNNEGSPRAPDDKQDVSEELQQATNRTNRGQREKRGPKVSKWGERVIEPPTGVNMPMGP
QQGQQGRPWNPLMAGNKRGMPQFRGNGPQNVRPSWPMAGGNMNGPPQGPPLYGKGNMGPI
RGNNMPPVAPPQAPVIPKPCNSIDNPQEDLVRTITIDGAAKEIRFYDQVAIVFMEVDQPR
EIGFQNGQRAICIDNNEPVVLHFNAGYKAVQIEGETFNLRFGFPSRELYIDEHWYEIYFG
GPPISVPIRNKIHMLKAEGPPPQVNIGPLRRDLVVGKINMIVDAHNVIPLFLDARMQTFK
LADNEHTIQFADSLLTVILDGTPTRVEYGGLPKSLFLGGKKYFVRFGALPQGVIAGKVQI
KDMLYVETQPPAKEELPVETMDTLPLPVAAATDINKVELQTTPAAPSVPILPAAALSNIN
IDELFQKLVSTGILGGASGILPAINTKTAEVTPADTAKSTESDKTVNVVSSESNTTEEVA
PPAPSVHMEPIKPIDLSKPESIKTRQSAIVETLFSGMQCSSCGVRFPPEQTIKYSQHLDW
HFRQNRRERDSSRKAHARKWYYDLNDWVQYEEIEDIEEREKNFFDSQQNDPEIMDETSNQ
RSTNSPIPTCPAGADDVDRACDMCQEKFEQYYDNELEEWHLRCAIRIEDKIYHPLCYEDY
KASLNPPAKTSETEEETANNDNNEISLIQIDDDNAVDIVIKVEEEDKDAKGKPTNSLDDD
DDDVIVLPNEEPSVTEIVDDDDDDDEYVPANVTREHMGNMNEEDEGQGELNETTESDVEI
QEPHIPFTDLDTYVEKELPEGDEASQMSFMNVKIKEEPKEDEDEDDGFEEVGTVVQAPEE
VSISISEETQTQTIDSSNPALSPLNERPPSTASSLQHNEDIESLMEPPAVDLNISMDGNI
DTGDEHNLSAAGPVPTVPLASLVNKIKINITKNTVTTNSNTSTSSNNATASSTMSSNLNH
NQTDSLGHISNPIPTISTIPVLCGGGTTISSISSSLIGGGGAGNGGEFNEHEDYGENSVS
TISVIGSYGSTVPTISHINRPVVSATPTVTAPKPVTPPPVEETITYDLKPALQKASLRKK
EKVVCGNETSGLCSIM
NT seq
5812 nt
NT seq
+upstream
nt +downstream
nt
ccaagaaaccaacaaaaaaaatcttaattttttatacttaaaacaggttccttctgaaat
taaattgccaatattgtatttaattgattctattgtaaaaaatgttaaaagcacttatgt
gcaactcttcagccaatgtattgtcaatatattttgtggagcctttgaaaaggttaatga
aaaaatccgggaacgcatgtatgctttacggcaaacctggaatgaggtattctcggcaca
aagattatatgctttagatgttaaagttaaacgtttggatcacaattggcccataaccgc
caaacaaccatcaatacatgttaatccaaattttctaaaggctaataatgcccaggctat
acccacagaaatggagaaaattttacaggataaaaccagagaactgttggaattgaaaaa
acgtaaattagaattggaattggaggccactaagaaacatttagaggaacaggaaaaaca
attctctaagacagcagaaggtgttatagcaccagtagaggcattagtggcggccaatag
tttacagactgtaggcattaggggagcagctatgccaacacaaatgatgcctggtcttat
ggcacccggctatatggggggtcctagcatagctgttaatccagccatgagaccagccat
gtttcatgctaatataagaggttttcgacctaatctacaccccaacatgatgaataatac
agcacagggaatgcagggcggtaatatgatgccagcagctatgaatgcagcaaatcttaa
caaacccaaggtgcatccggtcaattcagctttgttaaactcggtaagacaaagagatcc
acgcctgcagcgccaacagcaacaacagcagcagcagcagcaacaaatgcaacagcagca
aatgcaacaaaataatgaaagatctttggcggcgcaacagcaaaatgtacgctcctccca
tttggacaaagataaacatgaacgtaatcacaaaagtagccacaagtcaccaacacgcat
taactccagcagtcgttcttcgggcagcagtagcagtcgttctagtaaaagttctcaacg
tgataaagagcgagaacgtgatagggaacgtaaacgtagtgaatcaaaaagttctaccac
ttcatcctcatcttctggctcgaatgcaactaataatgagcgtaaaaaaggattttctaa
aacagacaaaacaacttcaaagtgtgataaagatgcctttgagattgctcctttggcaac
agcatttaaacgcaaatctacatcacccacatcgtcacccactaaatcacgtgattcaaa
acgttccagtagccataaaacacgtaatttatcacgcagtaaaacaagatcacgtagtcg
ttctcctgatgataaaaccaacaactcacgaacaacatttggtgatgttgatcttagacg
taattctacttcatcaacatcatcttctatgataaactcaccagaaaaacgaccaaaaat
aatagattctgatcaagaaacttgcagcaaaaataataaaaaggaagatttattaaaaac
aacaacaacaacaacagtggccaataataacaacaacaacaatagcgaaaaagaactaga
caaaaaaaaatctacagaaaatatactatcaccagaaacaacaactgcagctgcagcgtc
tctcaacacaaatcgttccagtacggatactctaaaggaaacggagactatgttgaagaa
agatgaggtagccgccgccggcagccaagtaagtaaagatgttgaagaggacggcaagaa
aagacctttggctccggtcaaagatgaagaacccctggctaaaaagagtaaatcggctaa
acttgatgcgttatttggctcggaagatgtagatttgagacaactaataccaccggtttt
gacggtttccacttctccacaagatgatatagctcctcctccaccagccattaatataac
tggcgatgtgtccagagaaagaaatgaaaattgggataatctcaagactgataacaataa
gaatgctaccactaaagctaaatcaagtcttgaggatgtgcgtgcaaaactggctaaaac
cgctaaatttaataaactttccaaattagataaacttactcgtgatattgatcatcgcaa
taaattggccgaattgcaaatgaatgatgatacccaggaggcaaatgatgagaaaatacg
caccatgattagccaagctcaagagctactggaaaccaaatcgatcagtcaagatcaata
taaacatttggtcaaaactgtcatgtctattaatgaaactaataaactgaaagaagccca
aagacgggaatcactaaatgccattaaacaaaaaaccattaatacagatgaaggttccaa
tgattctacagaacgtaatatggccatgcaggcgatattaaagaaacgtatacccaagtt
aaataagggacaaacagcggtcggtgagcaaaatacagattcacaacaaagcgaaggtag
taatggcaataatgaaggttcaccaagagcgccagacgataaacaagatgttagtgagga
gctgcagcaagctaccaatagaacaaatagaggtcagagagaaaaacgtggccccaaagt
gtctaaatggggagaacgtgttattgaaccgcccacaggagttaatatgcctatgggacc
acaacaaggacagcaaggacgaccttggaatcctttaatggctggcaataaaagaggtat
gccacaattccgtggcaatgggccacaaaatgtacgtccctcttggcccatggctggtgg
caatatgaatggcccaccccagggacctccactttatggcaaaggtaatatgggtcctat
acgtggcaataatatgcctcctgtggcaccaccacaagcacctgtcatacccaaaccctg
taattccatagacaatccccaagaggatctagtgcgcaccataaccatagatggcgctgc
caaagaaatacgtttttatgaccaagtggctatcgtttttatggaggtagatcaaccacg
tgaaataggtttccaaaatggtcagcgagccatttgtatagacaacaacgaacccgtggt
attgcacttcaatgccggctataaagccgtgcaaatcgaaggtgaaactttcaatctacg
ttttggttttccctcacgtgaactgtacattgatgagcactggtatgaaatctattttgg
tggcccacccattagtgtacccatacgtaataaaatacacatgctcaaggccgaaggacc
accacctcaagtaaatattggtcctttgcgtcgagatttggtagtgggtaagataaacat
gattgtggatgctcacaatgttattccgctgtttttggatgcacgcatgcaaaccttcaa
attagcagacaatgagcataccatacagtttgctgacagtcttctaacggttatcctaga
tggcactcctacacgcgtagaatatggtggtttgcctaagagtttatttttgggcggtaa
gaaatattttgtacgtttcggcgctttgcctcagggtgtaatagcgggaaaagtacaaat
taaggatatgttgtatgtggaaacacaaccaccggctaaagaggagttgcctgttgaaac
aatggatactttacctttaccagtcgccgcagcaactgatataaataaagtggaattgca
aacaacacccgcagcaccttctgtacccatactgccagcagcggctcttagtaatattaa
tatagatgaacttttccagaaattagtatccactggtatattgggtggtgctagtggtat
attgccagctattaatactaagacagcggaggttactcccgcagacactgctaaatccac
agaaagtgataaaacggtaaatgttgtttcttcagaatctaacacaaccgaagaagtggc
cccaccagcaccctctgtacatatggaacccattaagcccatagacctatcaaaaccgga
atccattaaaacacgccaatcagccatagtggagacacttttctccggtatgcagtgcag
tagttgtggtgtacgctttccacccgaacaaaccattaaatacagtcaacatttggattg
gcatttccgacaaaatcgtcgtgagcgtgattcttcacgcaaggctcatgcacgtaaatg
gtattacgatctcaacgattgggtgcaatacgaagaaatcgaagatatcgaagaaaggga
aaagaactttttcgattcacaacaaaacgatccagagatcatggatgaaacctccaatca
acgttccaccaactcacccatacccacttgccccgccggagcagatgatgttgatcgtgc
ctgtgatatgtgtcaagagaaattcgaacaatactatgataatgaactggaagaatggca
cttacgttgtgccattaggattgaggataaaatctatcatccgctgtgttatgaagacta
caaggcatcacttaatcctcctgccaaaacaagtgaaactgaggaagaaactgctaataa
cgacaacaatgaaatatcacttatacaaatcgatgatgataatgctgtcgatattgttat
aaaagtggaggaagaggataaagatgctaagggtaaacccaccaattcactagatgatga
tgacgatgatgttattgttttgcccaacgaagagccatcagttaccgaaatcgtggacga
tgatgatgacgacgatgaatacgtgccggctaatgtgacacgagaacatatgggtaatat
gaatgaagaggatgagggtcagggcgaactcaacgaaactacagaatctgatgtggaaat
acaggaacctcatataccatttacggatttggatacctatgtagaaaaggaattacccga
gggagatgaagcttcccaaatgtcctttatgaatgttaagataaaggaggagcccaagga
agacgaagatgaggatgatggttttgaggaagtgggtactgtagtacaagcacccgaaga
agtctccattagtataagtgaagaaacccaaacacaaaccatagattcatcaaatcccgc
tttatcgccccttaacgaaagaccaccttcaacagcctcctcgctgcaacacaatgaaga
catcgaatctttaatggaaccgcccgccgtagatttaaatatctccatggatggtaacat
agataccggcgacgaacacaatctgtccgctgccggtcctgttcctactgtgcccttggc
tagtttagttaataagattaaaataaatataaccaagaacactgtaaccacaaatagcaa
tactagtactagtagtaataatgccacagcatcctcaacgatgtcgtctaatttaaacca
caatcaaacagatagtttaggtcatatctcaaatcctatacccaccatctcaaccatacc
ggtgttgtgtggtggcggtaccacaatcagttccatatcgagtagtctgataggcggcgg
cggtgctggaaacggtggtgagttcaatgaacacgaagactatggtgaaaatagtgtaag
tacgatttccgttataggcagttatggcagcacagtacctacaatttcccatataaaccg
acccgttgtgtcagcaactcccactgtaacagcaccaaaacccgtcacaccgcctcctgt
agaagaaaccataacgtatgatctaaaacctgcgctacaaaaggctagcttaaggaaaaa
agaaaaggtggtgtgcggcaatgagacttcaggtctttgttccattatgtaa
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integrated database retrieval system
