Lonchura striata domestica (Bengalese finch): 110467935
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Entry
110467935 CDS
T05897
Symbol
DDX1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
lsr
Lonchura striata domestica (Bengalese finch)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsr03041
]
110467935 (DDX1)
03016 Transfer RNA biogenesis [BR:
lsr03016
]
110467935 (DDX1)
Enzymes [BR:
lsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110467935 (DDX1)
Spliceosome [BR:
lsr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
110467935 (DDX1)
Transfer RNA biogenesis [BR:
lsr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
110467935 (DDX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
110467935
NCBI-ProteinID:
XP_021381054
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All DBs
Position
3:100622285..100641825
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQMEGKKGKATIKTGGGVLNKWQMNPYDRGSAFAIGSDGLCCQSREIKEWH
GCRATRGVTKGKYYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYLDTEKGQIKFSKNGKDLGLAFEIPPHIRNQALFAACVLKNAELKF
NFGEEDFKFPPKDGYVGLCKAPEGSVVKSQHSGNAQVVQAQNLPNAPKALIVEPSRELAE
QTLNNVKQFKKYVDNPKLRELLIIGGVAARDQLSVLEQGVDIVVGTPGRLDDLVSTGKIN
LSQVRFLVLDEADGLLLQGYSDFINRIHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKTDKLWERLGKNHIRTDEVHAKDNTRPGAN
TPEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDRKGHQF
SCVCLHGDRKPQERKQNLERFKRGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAKEKEKVWYHVCSSRGKGCYNTRLKEEGGCTIWYNEMQLLG
EIEEHLNCTIAQVEPDIKVPVDDFDGKVTYGQKRALGGGLYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgttctcggaaatgggtgttatgcctgagatagctcaagcagtggaggagatg
gactggcttctccctacagatatccaagcagaatccatcccgttgatcttaggaggtggt
gatgtgcttatggctgctgaaaccgggagtggaaaaactggtgctttcagcattccagtt
atccaaattgtttatgaaacactgaaagaccaaatggaaggcaagaaaggaaaagccact
attaaaactggaggaggagtgcttaataaatggcaaatgaacccctatgacagaggatca
gcttttgcaattggatcggatggtttatgttgtcaaagcagagaaataaaagaatggcat
ggatgcagagcaactagaggagtgactaaagggaaatactactatgaagtttcctgtcat
gaccaaggcttgtgcagagttggttggtcaactatgcaggcttccctagatctgggcact
gataaatttggctttggatttggtggcactggtaagaaatctcacaacaagcaatttgac
agttatggtgaggaattcactatgcatgatacaattggctgttatctagacacagaaaaa
ggacaaattaaattttccaaaaatgggaaggaccttggccttgcgtttgaaatcccacca
catataaggaaccaagcgctttttgcagcttgtgtactgaagaatgctgaattgaaattc
aattttggtgaagaagatttcaagtttccaccaaaagatggctatgttggcctttgcaag
gctcctgagggtagtgttgtaaaatcacaacactcaggaaatgcacaagtggttcaagca
cagaaccttccaaatgctccaaaagcattgattgtagaaccgtcaagagagctggcagag
caaactttgaacaatgtgaaacagttcaaaaaatacgttgataatcccaaattaagggaa
ctgctaattattggtggagttgctgcaagagatcaactctctgtactggaacaaggtgtg
gatattgtcgttggaactcctggaaggctggatgacctggtctcaacaggaaagattaat
ttatctcaagttagattcctggttctggatgaagctgatggccttctcctccaaggttat
tcagatttcataaacaggatccacagtcaaattcctcaaataacctcagatggaaagaga
cttcaggtgattgtgtgctctgcaacactgcattcttttgatgtgaaaaaactatctgaa
aaaatcatgcattttcccacctgggttgacttgaaaggagaagattctgtccctgaaact
gtacaccatgtagttgtgcctgtaaatccaaaaactgataaactctgggaaagactcggc
aagaatcatatcagaactgatgaagtacatgcaaaagacaatacacgacctggtgctaac
actccagaaatgtggtctgaagctattaaaattctaaaaggagaatacactgttcgggca
atcaaagagcacaagatggatcaagccattatcttctgcaggactaaaatagattgtgat
aatatggagcaatacttcatccagcagggtggaggccctgataggaagggacatcaattc
tcatgcgtctgtctgcatggtgatagaaaacctcaagaaagaaagcaaaacctggaaaga
tttaagagaggagatgtccgtttcttgatctgcacagatgttgctgctagaggaattgat
attcatggtgttccatatgttatcaacgtgacgctccctgatgaaaaacagaactatgtt
catcgaattgggagagtcggcagagctgagaggatgggtttggcaatctcccttgtggca
aaagaaaaagaaaaggtttggtatcatgtgtgcagtagtcgtggaaaaggttgttataac
actagactgaaggaagaaggaggttgtaccatatggtacaatgagatgcagttgctggga
gagattgaagagcacttaaactgcactattgcccaagttgaaccagacataaaagtacca
gtggatgattttgatgggaaagttacatatgggcagaaaagagctctgggtggtggactg
tataaaggccatgtggatattctggcacctacagtacaagagttggctgcccttgaaaag
gaggctcagacatctttcttgcatcttggctatcttcctaaccagctgttcagaacattc
tga
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