Lonchura striata domestica (Bengalese finch): 110474554
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Entry
110474554 CDS
T05897
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33
KO
K15542
polyadenylation factor subunit 2
Organism
lsr
Lonchura striata domestica (Bengalese finch)
Pathway
lsr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110474554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsr03019
]
110474554
Messenger RNA biogenesis [BR:
lsr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110474554
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
eIF2A
Collagen
Ge1_WD40
Motif
Other DBs
NCBI-GeneID:
110474554
NCBI-ProteinID:
XP_021393713
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All DBs
Position
9:22809161..22862684
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AA seq
1320 aa
AA seq
DB search
MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIKYLENRVWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKC
PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKLNLNG
NWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWH
VGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLL
PGMSEDGVEYAPGDDLEPNSLAVIPGMGIPEQLKIAMEQEQMGKDESNDIEMTIPGLDWG
MEEVMQKDQKKVPQKKVPYAKPIPAQFQQAWMQNKVPLPPPPEPLNDRKEDIKLEEKKKS
QAEIEQEMAALQYTNPQLLEQLKIERLAQKQAEQVQPPPPGGSLHGPQPFPGQGPMSQMP
QGFQQPLPPQQMPMNMPQMGPPGPQGQFRPPGPQGQMGPQGPLHQGAGGPQGFMGPQGPP
GPQGPPQGMPRPQDLHGHQGMQRHPGPHGPMGPPGPQGNAGPQGHLGPQGLPGSQAHLGP
QGPPGPQGHLGPQGPPGGQGMQGPPGPRGMQGPLPHGMQGAPGSQGMQGPISQGPLMGLN
PRGMQGPPGPRDNQGPNPQGMMMGHPQEMRGPHMQSGLLGHGPQEMRGLQGPPPQGSMLG
PPQEMRGPPGPQGQQGPPQGSLVGPQGNMQGPQGQPNPSRGPHPSQGPLPFQQQKTPLLG
DGPRPPFNQDGQNPGPPPLIPGLGQQGGQGRLGPHNQGPGLNKGDARGPPNHHLGPLSDR
RHEQNSGGPEHGPERGLFRGGQDWSDGRDSRGMPDRRGPHPDFHDDFDRPDDFRDDFHPD
KRFGHRLREFEGRGGPPLQDEKWRRGGPGPPFPPDHREFEGGGSNRGPPGAWEGRRPSDD
RYPRDPEDARFRGRRDESFRRGGPSRHEGRGPRGRDGFPGPEDFGPDDAFDSPDENSRGR
DHGARGRGRGALRGARKGLLPTPDEFPRFEGGRKPESWDGNREPGPRPDHPPHDGHSPAN
RERSSSLQGMDMASLPPRKRPWHDGPGTSDHRDMDAPGGPPEERGKGRGNSGPSQRAPKS
GRSSSLDGDHHDGFHRDEAFGGGPGANPSRGGRSSSNWGRGNNMNSGQSRRGGSRGGRGR
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atggccacggagatcggctccccgccccgcttcttccacatgccgcgcttccagcaccag
gcgccgcggcagctcttctacaagcggcccgacttcgcccagcagcaggccatgcagcag
ctcaccttcgacggcaagcgcatgaggaaagccgtcaacaggaagaccatagactacaac
ccttctgtcatcaaatatttggagaatagagtgtggcagagagaccaacgagacatgcga
gcgatccagcccgatgcaggatattacaatgatttggtccctcctataggtatgctgaac
aatcctatgaatgctgtgacaacaaaatttgttcggacatctactaataaagtaaaatgc
ccagtgtttgttgtcaggtggactcctgaggggaggcgcttggtcactggtgcatctagt
ggggagttcactttatggaatggactgactttcaattttgaaacaatattgcaggctcac
gacagccctgtaagggctatgacttggtcacacaatgatatgtggatgctgacagcagac
cacgggggatatgtgaaatactggcagtccaacatgaacaacgtcaagatgttccaggca
cataaggaggcgattagagaggccagtttctcacccacggataataaatttgctacatgc
tctgacgacggcactgttagaatctgggactttctacgttgccatgaggagagaattctt
cgaggccatggagcagatgtgaaatgtgttgactggcatccaacaaagggattagttgtt
tcaggaagcaaagatagccaacagcccatcaagttctgggatccaaagactggccagagc
cttgccacactacatgctcacaaaaacacagtgatggaggtgaaactgaatctcaatggc
aactggctgctgacagcttctcgtgaccacctctgcaagctcttcgacatccggaacctg
aaggaagaacttcaggtcttcagggggcataagaaagaggccacagctgtggcctggcat
cctgttcatgaagggctgtttgccagtggagggtctgatggctccttgcttttctggcat
gttggggttgagaaggaggttggtgggatggaaatggcccatgaaggaatgatctggagt
ctggcatggcatcccctcggacacattctgtgttcaggatcaaatgatcacaccagcaag
ttttggactagaaatcggcctggagataaaatgagagatcgttacaacttgaacctgctg
cctgggatgtcagaggatggtgtggaatatgctccaggagatgatctggagcccaacagc
ctggcagttattcctgggatgggaatacctgagcagttgaaaatagctatggagcaggag
cagatggggaaagatgagtccaatgacattgaaatgacaatcccaggactggactgggga
atggaggaagtaatgcaaaaggaccaaaagaaagtgccacagaaaaaagttccctatgca
aaaccaataccagcacagtttcagcaggcatggatgcaaaataaagttcctttgcctccc
ccacctgagccattgaatgatagaaaggaggatattaagctggaggagaaaaagaaatca
caggcagagattgagcaggaaatggcagcacttcagtacacaaacccacaactcctggag
caactgaaaattgagagacttgcacaaaagcaagctgagcaagtgcagccaccgccccca
ggaggatctctccatggacctcagcctttcccagggcaaggcccgatgtcacagatgcct
caagggtttcagcagccccttccacctcagcagatgccaatgaatatgcctcagatggga
ccccccggtccacaaggacagttcagacctccgggaccccaaggacaaatgggacctcaa
ggtccattacaccaaggagctggaggtccacaagggttcatgggaccacaaggacctcca
ggcccccaagggcctccacaaggaatgccacggcctcaggatttacatggacatcaagga
atgcagagacatccgggccctcacgggccgatggggcccccaggtccccagggtaacgct
ggccctcagggacacttgggaccgcagggcctgcccgggtctcaggctcatttaggacca
cagggcccacctggcccacaaggtcacctgggtcctcagggtccccctggaggtcaagga
atgcaggggccacccggcccacgaggaatgcaaggacctcttccccacggcatgcaagga
gccccgggatctcaaggcatgcagggccctatatcccaagggcctttgatgggacttaat
ccgagaggcatgcagggtccaccaggacccagagataaccagggacctaatccacaaggg
atgatgatgggtcatccacaagaaatgagaggtcctcatatgcaaagtggtttactagga
cacggtccccaggagatgcggggccttcagggacccccacctcaaggttcaatgctggga
ccgccacaagaaatgcgtgggccacctggtccccagggccagcagggacctccacaaggc
tctttggtggggcctcaaggaaacatgcaaggacctcagggacagccaaacccttccagg
gggccgcacccttcccagggccctctgcccttccagcagcagaaaacgcctctgttgggt
gatgggcctcgtccccccttcaatcaggacggacagaacccgggtcctcctccgctgata
ccaggcctggggcagcaaggaggacaaggtcgtctgggccctcacaaccaaggacctggt
cttaataaaggtgatgcccgtgggccacccaaccatcacctgggcccgctgtcggaccgg
cggcacgagcagaacagcggcggccccgagcacgggcccgagaggggcctgttccgaggg
gggcaggactggagtgacggcagggacagcaggggcatgcccgacagacggggacctcac
cccgatttccacgatgacttcgaccggcccgacgacttccgggatgatttccacccagac
aagagatttggccatcgactgcgggagtttgaggggagaggaggcccaccattgcaagat
gagaaatggagacgaggtggacctgggcctccctttcctcctgatcacagggaatttgaa
ggaggtggttccaaccgggggcctcctggtgcttgggaaggacggagaccttcagatgac
agatacccacgggatcccgaggatgcgcgcttccgaggaaggcgagacgagagcttccga
agaggaggaccctcaagacacgagggccggggacccaggggcagagatggctttcctggc
cctgaagattttgggccagatgatgcttttgactctccagatgaaaactccagaggaagg
gaccatggtgctcggggacgaggtcgaggtgctctgagaggagctcggaagggtttgctt
cctactccagatgaattcccacgctttgaaggagggaggaaaccagaatcctgggatgga
aacagagaaccaggtcctcgtccagatcaccctcctcatgatgggcactctccagccaac
agagaacgttcctcttcactccagggcatggatatggcctcactgccaccacggaaacgc
ccctggcacgatggaccgggaacctctgaccacagagacatggatgctccaggtggacct
ccagaggagaggggcaaaggacgaggaaattcaggaccttcacagagagcgccgaaatct
gggaggtccagttctctagatggagaccaccacgatggattccacagggatgaagccttt
ggtggaggccctggggcaaacccttctcgaggaggaaggagcagcagcaattggggacga
ggaaataacatgaactctggccagtcccggagaggaggatctcggggtggacgaggccga
tag
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