Lonchura striata domestica (Bengalese finch): 110475048
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Entry
110475048 CDS
T05897
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
lsr
Lonchura striata domestica (Bengalese finch)
Pathway
lsr03022
Basal transcription factors
lsr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110475048
09124 Replication and repair
03420 Nucleotide excision repair
110475048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsr03021
]
110475048
03400 DNA repair and recombination proteins [BR:
lsr03400
]
110475048
Transcription machinery [BR:
lsr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
110475048
DNA repair and recombination proteins [BR:
lsr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
110475048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
IBR
VWA_3
HscB_4_cys
Motif
Other DBs
NCBI-GeneID:
110475048
NCBI-ProteinID:
XP_021394572
LinkDB
All DBs
Position
Z:complement(27507045..27518863)
Genome browser
AA seq
395 aa
AA seq
DB search
MDDEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRLYEHHGQVRLGMMRH
LYVVIDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGLIVTKSKRAEKMTEL
SGNSKKHVTALKKAVDMNCSGEPSLYNSLNLAMQTLKHMPGHTSREVLVVLSSLTTCDPA
NIYDLIKCLKAVKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLMHHVSPPP
ASSTSECSLIRMGFPQHTIASLSDQDAKPSFSMVQLENNSDPGLTLGGYFCPQCRAKYCE
LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEVPLEEYKGERYCQGCQGEMKDQNVYIC
KVCQNAFCVECDMFVHDSLHCCPGCIHEHPAPVSV
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgaacccgagcggaccaagcgctgggaaggaggctacgaaagaacatgggaa
attctcaaggaagacgaatctgggtcgttgaaggcaaccatcgaggacattctcttcaag
gcaaagaggaaaagactctatgaacaccatggacaagttcggcttggaatgatgcgtcac
ctttacgtggttattgatggatcaagaacaatggaggaccaagacttaaaaccgaacaga
cttacttgcactctgaagttactggaatattttgttgaagagtactttgaccagaatcct
attagccagattggcttaattgtaaccaagagtaaaagagctgaaaaaatgacagaactc
tcaggaaactcaaaaaagcatgtaactgctctgaagaaagcagtggatatgaactgcagt
ggagagccttctctatataattccctaaatttggccatgcagactttaaagcacatgcca
ggacatacaagcagagaggttttggtagtcctcagcagtctgacgacatgtgacccagcc
aacatctatgatctaattaagtgtttaaaagctgtaaagatcagagtatctgtcatcggc
ctaagtgctgaagttcgagtttgtactgtacttgcccgagaaactggtggaacatatcat
gttattttggatgaaagtcattataaggagctgttgatgcaccatgttagtcctccacct
gccagttcaacttctgagtgctctcttattcgaatgggatttcctcagcatactattgct
tctctatctgatcaagatgcaaagccctcctttagcatggtgcaattggaaaataacagt
gacccaggtcttacactgggtggatatttttgtcctcagtgcagagccaaatactgtgag
cttcctgtggaatgcaaaatctgtggtcttacattagtgtctgcacctcacttggctcgg
tcttaccatcacttatttccattagatgccttccaggaagttccactggaagaatacaaa
ggggaacggtattgtcagggctgtcagggagaaatgaaagatcaaaatgtatacatatgc
aaagtgtgtcagaacgcattttgcgtggaatgtgatatgtttgttcatgattcactgcac
tgctgtcctggctgtattcatgagcaccctgctcccgtatctgtatga
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