Lonchura striata domestica (Bengalese finch): 110478304
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Entry
110478304 CDS
T05897
Symbol
USP47
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 47 isoform X1
KO
K11857
ubiquitin carboxyl-terminal hydrolase 47 [EC:
3.4.19.12
]
Organism
lsr
Lonchura striata domestica (Bengalese finch)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lsr01002
]
110478304 (USP47)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lsr04121
]
110478304 (USP47)
Enzymes [BR:
lsr01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
110478304 (USP47)
Peptidases and inhibitors [BR:
lsr01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
110478304 (USP47)
Ubiquitin system [BR:
lsr04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
110478304 (USP47)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP47_C
UCH
UCH_1
Ubiquitin_2
ubiquitin
Sad1_UNC
Motif
Other DBs
NCBI-GeneID:
110478304
NCBI-ProteinID:
XP_021400534
LinkDB
All DBs
Position
5:complement(56581924..56633874)
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AA seq
1451 aa
AA seq
DB search
MDWRRGGAAALPAGAEEVEEEEEEEVEEEEEEEEEEEEEKKGEDEPRASPRLPLLLTTAL
GSACCGLRAAPPAMVPSEENQLVPKEDMFWSCRQSIFAEMKKKFSQAECAAEEPRVLCII
QDTTNSKTVNERVTLNLPASTPLKRLFEDVAAKVGYVNGSFDLLWSNGDSVTDTQTPIDQ
NSDKTILDAGFEPGKKNFLHLTDKDGEQPHVMQEESGTTEDGAQERFIGPLPREGSIGCT
HDYVSQSYSYSSVLSKSETGYVGLVNQAMTCYLNSLLQTLFMTPEFRNALYKWEFEESEE
DPERSIPYQLQRLFVLLQTSKKRAIETTDVTRSFGWDSSEAWQQHDVQELCRVMFDALEQ
KWKQTEQADLINQLYQGKLKDYVRCLECGYEGWRIDTYLDIPLVIRPYGSSQAFASVEEA
LHAFIQPEILDGPNQYFCERCKKKCDARKGLRFLHFPYLLTLQLKRFDFDYTTMHRIKLN
DRMTFPEELDMSVFIDVEDEKSPQTESCTDSGAENEGSCHSDQMSNDFSNDDGVDEGICL
ESNSAAERISKAGSEKSSLLYELFSVMVHSGSAAGGHYYACIKSFSDDQWYSFNDQHVSK
ITQEDIKKTYGGSSGSRGYYSSAFASSTNAYMLIYRLKDPTRNAKFLEAHEYPEHIKQLV
QKERELEEQEKRQREIERNTCKIKLFCMHPTKQIMMENKLEVHKDRTLKEAVEIAYKLMD
LEEAVPLNCCRLVKYDEFHDYLERSYEGEEDTPMGLLLGGVKSTYMFDLLLETRRPDQIF
QCYKPGEVMVKVHVVDLKTESVAPPISVRAYLNQTVSEFKQLISKATHLPAETMRVVLER
CYNDLRLLNMSSKTLKAEGFFRSNKVFVESSESLDRHVTYTDSQLWKLLDRHANTIRLYV
SLPEQAPGSQLRRALYHKSAGGAGNVDEPCERVKGPVGSMKSVEAILEESTEKLKSLSLQ
QQQQQEGDNGDSSKSTEASDFENIESPLNEIDSSASAENRELDNQIQVSDPENLQSEERS
DSDVNNDRSTSSVDSDILSSSHSSDTLCNVDNAPLPLANGLDSHSITSSRRSKANQGKKE
TWDTAEEDSGTDSEYDESGKSRGEAQYMYFKSEPYTTEEGSGEGQKWLMVHVDKRITLSA
FKQHLEPFVGVPSSHFKVFRVYASNQEFESVRLNETLSSFSDDNKITIRLGRALKKGEYR
VKVYQLLVNEPEPCKFLLDAVFAKGMTVRQSKEELLPQLQEQCGLDLTIDRFRLRKKTWK
NPGTVFLDYHIYEEDINISSNWEVFLEILDGVEKMKSMSQLAVLSRRWRPSEMKLDSFQE
VVLESSSVEELKEKLSEISGIPLENIEFAKGRGTFPCDISILEIHQDLDWNPKVSTLNVW
PLYICDDGAVIFYRDKAEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYL
DGAPNKDLTQD
NT seq
4356 nt
NT seq
+upstream
nt +downstream
nt
atggattggcggcggggcggggccgcggcgctgcccgcgggagcggaggaggtggaagag
gaggaagaggaggaggtggaagaggaagaagaagaggaggaggaggaggaggaggagaag
aagggggaggatgagccgcgggcgtccccccgcctcccgctgttgctgacgacggcgctc
gggtcagcctgctgcgggctccgcgccgcgccaccggccatggtgcccagcgaggagaac
cagctcgtccccaaagaggatatgttttggagttgcagacagagtatctttgctgaaatg
aagaagaagttttcacaggccgaatgtgctgctgaggagcccagggtgctgtgtataata
caggacaccacgaattccaagacggtgaatgaacgtgttaccctgaacctgccagcttcc
accccgctcaaacggctctttgaagacgtggctgccaaagtgggctacgtcaatggctct
tttgatttgctgtggagcaatggagacagtgtcactgacacgcagactccaatagatcag
aacagtgacaaaaccattcttgatgctggttttgagccaggaaagaagaactttctgcat
ttgacagacaaggatggtgaacagcctcatgtaatgcaggaggagtcgggtacaacagag
gatggtgcacaggaaagattcataggtccccttccaagagaaggctccattggatgtacc
catgactatgtcagtcaaagctattcttattcttcagtcctgagcaaatcagaaacaggt
tatgtgggtctggtaaatcaagcaatgacttgctacttgaacagccttctgcaaacactt
ttcatgactcctgaatttagaaatgcattgtataagtgggaatttgaggaatctgaagaa
gatcctgagaggagtatcccctaccagcttcaaagactgtttgttttactgcagaccagc
aaaaaaagggcgattgaaacgacagacgttacacggagttttggatgggatagcagtgaa
gcctggcagcagcatgatgtgcaggagctttgtagagtcatgtttgatgctttggagcag
aaatggaagcaaacagagcaggctgatcttataaatcaactgtaccaaggcaaactgaaa
gactatgtgaggtgcctggagtgtggctatgaaggctggagaattgacacgtacctggat
atccctctggtcatccggccctatggctccagccaggcgtttgctagcgtggaagaagca
ctgcatgctttcattcagcctgagatccttgatggcccaaatcagtacttttgtgagcga
tgtaagaagaaatgtgatgcaaggaagggtctgcggttcttgcactttccgtacctgctg
accttacagctgaagagatttgactttgattacaccacaatgcacagaattaaactcaat
gatcgcatgacttttccagaggagttggacatgagtgtctttattgatgttgaagatgag
aagtcacctcagaccgagagttgcactgatagtggagctgaaaatgaaggcagttgtcac
agtgatcagatgagcaatgatttttctaatgatgatggagttgatgaaggaatctgcctt
gaaagcaatagtgcagcagagaggatctctaaagctggcagtgaaaagagttctttgcta
tatgagctcttttctgtcatggttcattctggaagtgctgctggtggccattattatgcc
tgtataaaatcttttagtgatgatcagtggtacagctttaatgatcaacacgttagcaag
ataactcaggaagatattaagaaaacatacggaggatcttctggaagcagaggatattat
tccagtgcttttgctagctccacaaatgcttacatgctgatatacagactgaaagatcca
acaagaaatgcaaagtttcttgaggcacatgaatatccagagcacattaaacaattggta
cagaaagagagagaattagaagaacaagaaaagaggcaacgtgaaattgaacgcaacacg
tgcaagattaaattattctgcatgcatcctacaaagcaaataatgatggagaacaaattg
gaagttcataaggacagaacactgaaggaagctgtggaaatagcttacaagttaatggat
ttagaagaggctgttccattgaactgctgtcgtcttgtcaaatatgatgagttccatgac
tacttggagcgctcttatgaaggagaagaggataccccaatgggtttgttacttggaggg
gtcaagtcaacctacatgtttgatttactgttggaaacaagaaggcctgaccaaattttc
caatgctataaacctggtgaggtcatggtaaaggttcatgtagttgacctgaagactgaa
tctgttgcccctccaataagtgtgcgagcttatttgaatcaaacagtttcagagtttaag
cagctaatttcaaaggccacacacctgcccgccgaaaccatgcgggtggtgctggagagg
tgctacaatgacctgcgtctgctgaacatgtccagcaaaacactgaaagctgaaggcttt
tttagaagcaacaaggtgtttgttgaaagctcagagtctttggaccgtcatgtgacatac
acagactctcagctgtggaagcttttggatcgccatgcgaacacgatcagactgtacgtg
tcattgccagagcaagctcctggatctcagctcagacgggctctttatcacaagtctgct
gggggtgcaggcaacgtggatgagccttgtgaaagagtaaaaggacctgtaggtagtatg
aaatctgtagaagcaattttggaagaaagcaccgaaaaacttaaaagcttgtctctgcag
caacagcagcagcaggagggagataatggagacagcagcaaaagcacagaagccagtgat
tttgaaaacattgagtcacctttaaatgaaatagactcttcagcatcagcagaaaacaga
gaacttgacaaccaaattcaggtttctgatccagagaatctgcagtccgaggagcggtcg
gactcggatgtcaataatgacaggagtacgagttcagtggacagtgacatcctcagctcc
agccacagcagcgacacgttgtgcaacgtggacaacgctccccttcccctggctaacgga
ctggactctcacagcatcacgagtagcaggcgatcaaaagccaatcagggcaagaaggaa
acctgggacacagcagaagaggattctggaacagacagtgaatatgatgaaagtggcaag
agcagaggagaagcacaatatatgtactttaaatcagaaccctatactacagaggagggt
tcaggagaagggcaaaaatggctgatggtacatgttgacaaaagaattacactgtctgcc
ttcaagcaacacttggagccttttgttggagttccatcttctcacttcaaagtctttaga
gtctatgccagcaatcaagagtttgagagtgttcggctgaatgagaccctttcatcattt
tctgatgacaataagataactattagacttggaagagccctaaagaagggtgaatacaga
gttaaagtctatcaactcttggtaaatgagcctgagccctgcaagtttcttctagatgca
gtttttgctaaaggaatgactgtccgacagtccaaagaggagctgcttcctcagcttcaa
gaacaatgtggcctagacttgacaattgacaggtttcgtctacgaaagaaaacctggaag
aatccaggtactgtgtttctggattatcatatctatgaagaagatatcaatatatccagc
aactgggaggtcttcttagaaatacttgatggagtagaaaagatgaaatcgatgtcacaa
cttgctgttttatcaagacgatggaggccgtcagagatgaaattagattctttccaggaa
gtagtactagaaagcagcagtgtcgaagaattaaaagagaagctaagtgaaataagtgga
atacccttagaaaacatagaatttgcaaagggtagaggaacctttccctgcgacatttcc
atactagagattcatcaagacttggactggaatccaaaagtatccacgttgaatgtctgg
cccctgtacatttgtgatgatggtgcagtaatattttatagggataaagctgaagaatta
atggaattaacagatgagcaaagaaatgaactgatgaaaaaagaaagcagcagactccag
aaaactggacaccgggtaacctactctccccgtaaagaaaaagcactaaaaatttatctg
gatggagcaccaaataaagatttgactcaagactga
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