Lonchura striata domestica (Bengalese finch): 110478426
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Entry
110478426 CDS
T05897
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
lsr
Lonchura striata domestica (Bengalese finch)
Pathway
lsr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110478426 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsr03021
]
110478426 (PCF11)
03019 Messenger RNA biogenesis [BR:
lsr03019
]
110478426 (PCF11)
Transcription machinery [BR:
lsr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110478426 (PCF11)
Messenger RNA biogenesis [BR:
lsr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110478426 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
DNA_pol3_a_NI
Motif
Other DBs
NCBI-GeneID:
110478426
NCBI-ProteinID:
XP_021400717
LinkDB
All DBs
Position
1:81648520..81669106
Genome browser
AA seq
1700 aa
AA seq
DB search
MSAPESSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESNAPTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSSIASVPAPSKQHMSPTPHMTVKPPHQTAVQSEKNKPSPSPPLHDIKIVNRDPRLNRM
GQHSSHTKDQSHRKEFSPSVTGQSETKGNKTAQAEKQNSTKSEKSKASEKTQKKELEQSK
AKSKSPSPLKNKLPDTKDSKSQECETTKVSDISKRDPRLKRHLQDKSEGKEEEVKEKRRS
TEKKEKEDHKTCEHRPVGSRNKVINGAVQKQDVTTEESEKQSGKQGRSSSRKRSRSRSPK
ARSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHVEEGTQAAREERNSN
KRNVKQEVRDPRRLKKAQEERPQETTTQHSAKASPDPKENAENWQGSKSGKRWKSGWEES
KNSQQNDEHQALVKSPHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANDRLTSGEITQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGLKKKPLLS
DAELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHIPDALLSGIECDQAKAKRGVPFD
RKEPFAERSRRHSPVSGTTRPFAENVSPLESRRRLEDQRATKGARGSDPYDSWGESDEFR
DALRQQGKSTAEFQKTDGDALCRFDNREERQLLGQAGVREEPRSPFTERFKRARYEDPEK
APFPESPGSRFGGIEAKQRISALMEDRPLFDGSPRPTAARVGVDGQGSPFVDGPTAGSSS
RIDGPAGQAAMRFEGPLVGTGASQFDGPLAGAGGAGALRFDGPPGQLAGSLRFEGPPGQV
GGGGPLRFEGPLGPLRFEGPTGQPVGGARFEGPGVGLRFEGPHGQPSGGLRFEGPHGQPM
GPRGQPGGGLRFEGPHGQPLGPHGQPGGSLRFEGPHLQPLGPHGQLGGGLRFEGPHGQPM
GPHGPSGGGLRFEGPHGPSGGGLRLDGPRGQPGLGPRLIDGPVHQGAGGLRFDGPLGRAG
PRFDGCHGAGFDGQPGQLSLLQRFDGIHGQPGPRLAPGQQAQARFETAIPQRFDGPHQPA
SRFDLPLGLQGARFENVANHPASRLEMSPYGQGGPFVEHPGQGYNGPAHGMQFQRPDIFD
GSPGPNFSGPAGPGAQNFPLRAAGHYFEEKGLQGPQYGNFNNMPMGSNQVSLMSAQPGPY
GQGQQYLPNPGSFVQNPAGALSHSYPDNHLGQVDVNELFAKLLKTGILKLSKTDSTSAQA
NETSSQPTAEEEDDDQNEDQNVPDLTNFIVEELRQRYDSVINRLYTGIQCYSCGMRFTTS
QTDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAH
EEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKI
YHPSCYEDYQNTSSFDCTPSPSKTPSENPLNIMLDIVKQETEESCDSPKIKEEPDDTPPA
CAEETTPASTEIKTEPEESV
NT seq
5103 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcagcgctggcagcagcgaggcccgggaggacgcgtgccgcgac
taccagtcgtcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcatcagagaagctacccgttatgtacctaatggattccattgtc
aagaatgtgggaagagagtatctcacagcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgatatttttcctttgaagaaactatatgcacttgatgtcagagtcaactcatta
gatcctgcctggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatctaatgcacctacctctgctgtcact
tctggtgcctctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcag
ctgataaggcagcaattgcttgcaaagcaaaaacagttgttagaacttcagcaaaaaaaa
ctagagctggagctggaacagactaaagcacagttggctgtctctctcagtgttcagcag
ggatcatctagtatagcttcagttccagcaccttccaagcaacacatgtctcccacacct
catatgacagttaaaccacctcatcaaactgctgtgcaatctgaaaaaaacaaaccatcc
ccaagtcctccacttcatgatatcaaaatagtgaacagggatcctcggcttaataggatg
ggtcaacattcttctcatactaaagatcagtctcacaggaaagaattttcaccgagtgtg
accgggcagtctgagaccaagggaaacaaaacagcacaggctgaaaaacagaactcaaca
aagtcagaaaaatcaaaagcaagtgaaaaaacacagaagaaagaacttgaacagtccaaa
gcaaaatctaaatcgccatcccctttaaaaaataagctaccggatactaaagacagtaaa
agccaagaatgtgaaaccactaaggtttctgacatcagtaagcgggatccaagactgaaa
agacatcttcaagataagtcagaggggaaggaagaagaggtcaaagaaaagaggagaagt
acagaaaagaaggagaaagaggatcataagacatgtgaacatagaccggtggggagcaga
aataaagtgattaacggtgctgttcagaaacaagacgtgactacagaggagtcagaaaaa
cagagtggaaaacaaggaagatcaagcagtagaaagcggtcacggtcacgctctcctaag
gcaagatcaccatctacacattctccaaaaagacgggagaggagatcacctaaaagaaga
cttcggagtttatcgcctacttcatcaactcctaaaattggaaagatacgtcagataggc
cctaagcagtctcatgttgaagaaggcacacaagcagcaagagaggaaagaaattctaat
aagagaaatgttaaacaagaggtgcgtgatccaaggagattgaaaaaagcccaagaagaa
agaccccaagagacgaccacccagcattctgcaaaagcttctccagatccaaaggagaat
gcagaaaactggcagggatccaaatcaggcaagaggtggaaatctggttgggaagaaagt
aaaaactcacagcagaatgatgaacaccaagcacttgttaaatcccctcaccaaagacat
cgggaaaactggcctgcgggtaaaggaattctatcaccccgagcaccaaagcagcagcac
cggttaagtgtggatgccaatttacagattcccaaagaattgacatctgcaagtaaaagg
gaattacttaagaaggctaatgatcgcttaacatctggagaaataacacaagatgagttt
ctcatggtagctcatcagatccgacagctgttccagtatcaggaaggaaagcacagatgt
aacgtctgggatagtcctacagaggaaaaatgtggtttgaaaaagaaacctcttctatcg
gatgcagaattaacgtattatgaacataaagccaaactaaaaaggacacaagttcagcat
tcattgtcaaggcttgatctgttggatcctgatgatattttggattatcatatacctgat
gcattgctttctggaatagaatgtgaccaggcaaaagccaagcggggggtaccgtttgat
agaaaagaaccatttgcagaaagatcaaggagacactctcctgtaagtggcactacaaga
ccttttgctgaaaacgtgtcaccgcttgagagtcgacgaagacttgaagaccagcgtgct
actaaaggagcgagaggttctgatccttatgacagctggggagaatcggatgaatttaga
gatgctctcagacaacaagggaaaagtacagctgagttccagaaaacagatggagatgca
ctctgtaggtttgataatcgtgaagaaagacagcttcttgggcaagctggtgttcgagag
gagccaaggtcaccattcactgaacgtttcaaaagagctaggtatgaagatccagagaaa
gcaccatttccagaaagtccaggatcaaggtttggcggtattgaagcaaagcagaggata
agtgcactgatggaagacagacctctgtttgatggctcacctagaccgactgctgcaagg
gttggggtagatggacaaggcagtccttttgttgatggtcctactgctggttcaagttcc
agaattgatgggccagctggacaggctgctatgagatttgaggggcctttggtggggaca
ggtgcatctcagtttgatggaccactggcaggagcagggggagctggagccctaaggttt
gatgggccaccagggcagctagcagggtccctgagatttgaaggacccccaggccaggtt
ggtggaggaggtccgctgcggtttgagggacctcttgggcctttgaggtttgagggacct
acagggcagcctgtaggtggtgctagatttgaaggtcctggagttggtctcaggtttgag
ggtcctcatggtcagccttcaggtggtctcaggtttgagggacctcatggtcaacctatg
gggcctcggggtcaaccagggggtggtctcaggtttgagggaccccatggtcagcccttg
gggcctcatggtcaaccaggaggtagcctcaggtttgaggggccacatttacagccattg
gggccccatggacaacttggaggtggcctcagatttgaggggccacatggtcagcccatg
gggccacatgggccatcaggtggtgggctcaggtttgaggggccgcatggaccatcgggt
ggtgggctgagactggatggaccacgtggtcagccgggtctaggccccaggttgattgac
ggaccagtacaccagggagctggtggacttagatttgatggtcctcttggtcgggctggt
ccaagatttgatggctgtcatggagctggatttgatggtcagcctggacagctgtctctc
ctgcaaagatttgatggaattcatggacagcctggtccaaggttggcacctggccaacag
gcacaagcaagatttgaaacagccatacctcaaagatttgatggacctcaccagccagcc
tctaggtttgacttgccccttggccttcagggtgcacgttttgaaaatgtagctaaccat
cctgcctcaagactagaaatgtcaccatatggacaaggtggtccgtttgttgaacatcct
ggccagggctacaatggaccagctcacggaatgcagttccagagacctgatatatttgat
ggttcacccggaccaaatttcagtgggccagctggcccaggagcacagaacttcccactg
agagcagctggacattactttgaagaaaaaggtctccagggtcctcagtatggaaatttc
aataatatgccaatgggaagtaatcaggtttctctcatgtctgctcaaccaggaccttat
ggccaaggtcagcagtatttgccaaatcctggaagttttgtccagaaccctgcaggagcc
ctttcccattcatatcctgataaccaccttggacaggttgatgttaatgaattgtttgct
aaactgctgaaaacagggatcctcaaattgtctaaaactgattccacttcagcacaagca
aatgaaacatcgtcccagccgactgctgaagaagaagatgatgatcagaatgaagatcag
aatgttccagacctcactaacttcatagttgaagaacttagacagcgttatgatagtgtt
ataaatcgactgtacactggaattcagtgttactcctgtggaatgagattcactacttca
cagacagatgtttatgcagatcatttagattggcattatcgccagaaccggacagaaaaa
gatgttagcagaaaaataacacacaggagatggtactacagtttaacagactggattgaa
tttgaagaaatagcagatctagaggagcgtgctaaaagccagttctttgaaaaagctcat
gaagaggttgtgttgaagacacaggaagctgcgaaagagaaggagtttcagagtgtccca
gctggaccagctggagcagtggagagctgtgaaatttgccaagaacaatttgaacagtat
tgggatgaggaagaggaagagtggcatctgaagaatgctatcagggtagatgaaaagatt
taccatccatcttgttatgaagattaccagaatacatcatcatttgattgcacaccgtct
cccagcaagactccctcagaaaatccactaaatataatgttggacattgttaaacaagaa
acagaagagtcctgtgactcacctaaaatcaaagaagaacctgatgacactcctcctgcc
tgtgcagaagagaccacacctgcatctacagaaataaaaacagaacctgaggagtctgtt
taa
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integrated database retrieval system
