Lonchura striata domestica (Bengalese finch): 110479341
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Entry
110479341 CDS
T05897
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
lsr
Lonchura striata domestica (Bengalese finch)
Pathway
lsr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
110479341 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsr03400
]
110479341 (LIG4)
Enzymes [BR:
lsr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
110479341 (LIG4)
DNA repair and recombination proteins [BR:
lsr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
110479341 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Tox-REase-9
Motif
Other DBs
NCBI-GeneID:
110479341
NCBI-ProteinID:
XP_021402262
LinkDB
All DBs
Position
1:35288816..35293078
Genome browser
AA seq
912 aa
AA seq
DB search
MASAPVSQPPPKKTVASHVPFADLCSTLERIQKSKSRPEKTKYFKDFLDSWRKFHDALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLSLPKDGKDAAKLLNYRTP
TGSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNAAKNKGQLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMGNQTFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPFIHNVFKSNIQNCILDGEMMAYNPEAQSFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMVNDQKLGHEVLSKRYEILSSVFTPVKGRIHVVHKRSARTRKEVI
DALNEAIDNREEGIMVKNPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAVAETPPPNEKPTIFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKDPP
GNILCGAEKPEMYIEPCNSVIVQIKAAEIVDSDMYKTDCTLRFPRIEKIREDKEWYECMT
SDMLEDLRNKAQGKLASKHLHIDEYDEPHEKKRKTVSKVRKVIGIAEQFKAPDLSSVSKV
SNVFEDVEFCVMTGMGKYSKSELESRIAQCGGSVVQNPGPETYCVIVGVENVRVKNIIAS
NKYDVVRAEWLLQCFQTKMLVPWQPAFMIHMCPDTKEHFAREYDCYGDSYTANTDVTQLK
EVFSRIKDSKAMPLDLIAELEERYWRNSCQLGMFRGSTIYVDCYAVVNEPQSKIPGTTLS
IRALELRFYGAKVVSHLEEGVSHVVVGEDCSRVEEMKALRRTFGKKFKIVSELWVTHSVE
EGVAKNENQYLV
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcacctgtttcacagcctcctcctaaaaaaacagtggcctctcacgtgcct
tttgcagatctgtgttctactctggagcgaatacagaagtccaaatctcgtccagagaaa
accaagtatttcaaggattttctggattcctggaggaaattccatgatgcacttcatcag
aaagagaaagatgtcacagattccttttacccagctatgcggcttattctcccacagttg
gaaagagaaaggatggcatatggaattaaagaaactatgcttgcaaagctctatattgaa
ctgcttagtttaccaaaagatggaaaagatgctgcaaagcttttaaattatagaacgcct
acgggctcacgtggagatgctggagatttcgcaatgattgcgtactttgtgctaaaacct
aggagcccaaaacaaggcagactgacaatagaacaagtcaatgaacatttagatgcgatt
gctaataataatgctgctaaaaacaaggggcagctaaagaaaagtcttcttcagttaatt
acccagagcacagcactggaacaaaaatggcttatccgaatgattataaaggatctaaag
cttggtgttagtcaacaaactatattttcaatttttcatcctgatgctgctgaattacac
aatgttactactgatttggaaaaagtttgcagacaactgcatgatccctctgtctcactt
agtgatgtttctatcatgttgttttctgcctttaaaccaatgcttgctgctattgcagat
gtccagcaaattgagaaacaaatgggtaaccagacattctacatagaaaccaagctggat
ggtgaacgtatgcagatgcacaaagatggggatgtgtacaagtatttttcccgaaatggg
tttgactatactcagcagtttggtgcttcaccccttgaaggctcattaacaccatttatt
cacaatgtatttaagagcaatatacaaaattgcattcttgatggtgaaatgatggcttac
aatcctgaggcacaaagttttatgcaaaaaggaaacaaatttgacataaaaagaatggtg
gaggactctgatctgcagacctgcttctgtgtatttgatgtattgatggttaatgatcag
aagctcgggcatgaagtactaagcaaaagatacgaaatcttaagtagtgtattcacccct
gtaaagggcaggatacatgttgtccataagagaagtgccagaacaagaaaagaagtaatt
gatgctttaaatgaagccatagataacagagaggaaggaattatggtgaaaaatcccatg
tccacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatatgtc
aatggactgatggatgaactggaccttttaattgttggtggttactgggggaaggggtct
cgtggtggaatgatgtctcattttctatgcgctgttgcagagacgccccctccgaatgaa
aaaccgaccattttccactccatttgtcgtgttggctctggctatactatgaaagagttg
tatgatctaggcttgaaactggctaaacactggaagccctaccataggaaggaccctcct
ggtaacattttgtgtggagctgaaaaacctgaaatgtacattgaaccttgcaactctgtc
atagttcagatcaaggcagctgagattgttgacagtgatatgtataaaactgactgtact
ttgagattcccccgaattgagaagataagggaagacaaagaatggtatgagtgcatgact
tcagacatgttagaagacctcagaaacaaagcacaaggaaagctggcatctaagcacctt
catatagatgagtatgatgaaccacatgagaaaaaaaggaaaactgtttcaaaggtgagg
aaggtaattggaatagctgagcaatttaaagctcctgatctttcaagtgtaagcaaggtt
tcaaatgtgtttgaagatgtggagttttgtgttatgacaggaatgggaaaatactcaaag
tctgagctggaaagcagaatagcccaatgtggtggcagtgtggtacagaacccggggccg
gagacttactgtgtcattgtaggagttgagaatgtcagagtgaaaaacatcattgcttcc
aacaaatatgatgtggtgagggcagagtggctccttcagtgttttcaaaccaaaatgctg
gtgccttggcaaccagcctttatgattcacatgtgtcctgacacaaaagaacattttgct
cgtgagtatgattgttatggagacagttacacagcaaacacagatgttacacagctcaag
gaagtgttttcaagaataaaagacagcaaggcaatgcctctggacttgattgcagagcta
gaagaacgttattggcggaacagttgtcagctcggtatgttcagaggaagcactatttat
gtggactgttatgctgttgttaatgagccccaaagcaaaatccctggaactacactttca
attagagctttggagctccgtttttatggtgcaaaagtagtttctcaccttgaagagggt
gtctcccatgttgttgtaggagaagattgttcacgggtagaagagatgaaggcactcagg
agaacatttgggaaaaaatttaaaattgtatccgagctgtgggtgacacactcagtggag
gaaggagtcgcaaagaatgaaaatcagtacttagtttaa
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